Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0498 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAAGGACTTAGGGTTCTTCTCCTTGAAGGAGACAACAATTCTGCTTCTGAAATAAGAACAAAGCTTGAATCTATGGACTATAATGTTTCTACGTTCTACAATGAAAATGAAGCCTTGTCAGCAATCTCAAGTAGTCCCAAATGCTTCCATGTTGCCATAGTGGAGGTGAGTATAAGCTGCCCTGATGGAGGTTTCAAATTTCTCGAGAATGCAAAAGACTTGCCAACCATTATGACGTCGAATAGTCAGTGCATAAACACAATGATGAAGTGCATCGCGCTTGGTGCAGTTGAGTTCCTCACTAAACCACTTTCTGAGGACAAGCTGAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCCGAGGCAAGCGCTCTGTCTGAATCACTTAAACCGGTCAAAGAATCTGTAGAGTCCATGTTGCATCTCCAAACAGACAACACACTACATGAAAGTACAATATCAATAGATTTAGATAAGGTGTCCAAGTTTAGTGATAATGAACATGAGCATTCTGCGGCAAGCGATAAATATCCGGCTCCTTCCACCCCGCAATTAAAACAAGGGGCAAGGTTAGTGGATGATGGTGATTGCCACGAGCAGACTAATTGCTTAATAGAAAAAGAAAGTGGGGAACATGACAGTGGTGAATGTAAATTTGTCGACACTTCATGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCTACAAAACATCTGATTAAGGAGGAAGAAGATTTTGCCAAGGGTTCCAAGGGTGAGGGTGGTGCTTCATTGAATCCACTTAATAAAAATTTTCTCGGCGACGCTGGTGGCAATACATCTCTGAATAAAACAAGGGTTTTTAACGATCCGTGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACAGCTGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGTATATTGGAGTTAATGAAAGTCGACGGTTTGACAAGGCATAATGTGGCAAGCCATCTTCAGATTTTTGTTGAACAGAAATATAGAATGCACAAGAGACAGATCATCCACACGGACGAAGATCGAAAATGGCCAAATCGAAGAGATCCTATGCAAAGGAACTATTGTATGCAAAGACCGATTATGGCTTATCCACCATATCATTCTAATCACACCTTTCCTCCAGCTCCTGCATATCCCATGTGGGGCCAACATGGAAGTCAAACAGCTGGTGTACCGATTTGGAGTCCTCCGGGTTATCCTCTATGGCAGCCTACAGAAAGTTGGCATTGGAAGCCATATCCGCCAGGGGTGCATGTGGATGCATGGGGTAACCCAATGTTGCGCCCACCTCAAACTCACTGTATTCCATACACTCAAAATATGGCTGGGATGCACAATGCTAAAGCAGTGGATTATAGTTATCCGGCAGAGGAAGTGGTGGACAAGGCTGTGAAGGAGGCAATAAACAAGCCATGGCTACCTTTACCTATAGGCCTCAAACCTCCTTCAATGGATAGTGTGTTGGATGAACTTTCCAAACAAGGCATTCCTTTTAGCAAGAAGAGCAAGGGCTCTAGACCATGCTGA 1647 0.4299 MVCTANDLQGWKDFPKGLRVLLLEGDNNSASEIRTKLESMDYNVSTFYNENEALSAISSSPKCFHVAIVEVSISCPDGGFKFLENAKDLPTIMTSNSQCINTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAEASALSESLKPVKESVESMLHLQTDNTLHESTISIDLDKVSKFSDNEHEHSAASDKYPAPSTPQLKQGARLVDDGDCHEQTNCLIEKESGEHDSGECKFVDTSCENLNAESSPQPTKHLIKEEEDFAKGSKGEGGASLNPLNKNFLGDAGGNTSLNKTRVFNDPCENKANRKKMKVDWTAELHKKFVKAVEQLGIDQAIPSRILELMKVDGLTRHNVASHLQIFVEQKYRMHKRQIIHTDEDRKWPNRRDPMQRNYCMQRPIMAYPPYHSNHTFPPAPAYPMWGQHGSQTAGVPIWSPPGYPLWQPTESWHWKPYPPGVHVDAWGNPMLRPPQTHCIPYTQNMAGMHNAKAVDYSYPAEEVVDKAVKEAINKPWLPLPIGLKPPSMDSVLDELSKQGIPFSKKSKGSRPC* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0498 548 SUPERFAMILY Homeodomain-like 310 363 IPR009057 -
Mtr5g0498 548 MobiDBLite consensus disorder prediction 182 205 - -
Mtr5g0498 548 Gene3D - 18 147 - -
Mtr5g0498 548 Pfam Myb-like DNA-binding domain 314 360 IPR001005 -
Mtr5g0498 548 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Mtr5g0498 548 Gene3D - 307 374 - -
Mtr5g0498 548 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 546 - -
Mtr5g0498 548 SUPERFAMILY CheY-like 16 135 IPR011006 -
Mtr5g0498 548 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 546 IPR044825 GO:0003700|GO:0045893
Mtr5g0498 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 308 367 IPR017930 -
Mtr5g0498 548 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Mtr5g0498 548 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 311 363 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0498 Mtr-Chr5 4645366 4651718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0498 1 536 Response Regulator Gene Family AT4G18020 48.776 1.92e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr5g0498 Response_reg 1.1e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0498 - - gmx:100784905 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0498 5 4645366 4651718 Mtr4g3505 4 48727168 48733409 PCT