Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0472 ATGGAGGAGGAAAGATACGAGATATTGAAGGACCTTGGTTCTGGAAACTTTGGAGTGACTAGGTTGGCTAAAGACAAAAAGACAGGAGAACTTGTTGCTATCAAATACATTGAAAGAGGATATAAGATTGATGAGAATGTTCCAAGGGAGATAGTTAACCATCGATCTTTAAGGCATCCAAATATTATCAAGTTCAAAGAGGTATTTGTGACACCAACTCATTTAGCTATTGTCCTGGAGTATGCTGCTGGTGGTGAACTTTTTGACAGGATAGCCTCTGCTGGTCGACTCAGTGAAGACGAGGCAAGATTTTTCTTCCAACAACTAATATCTGGAGTTAGCTACTGTCATTCCATGGAAATTTGTCATAGAGATCTAAAATTGGAGAACACTTTATTGGATGGAAGTCCAGCTCCTCGAGTTAAAATTTGTGACTTTGGTTTCTCCAAGTCCTCTTTACTCCACTCTCAGCCCAAATCAACAGTTGGAACTCCTGCATATGTTGCACCAGAGGTTTTGTCTAGAAAAGAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTTTATGTCATGTTAGTTGGATCATACCCTTTTGAAGATCCAGAAGATCCTAGAAATTTCAGAGCGGTTATTACGAAAATAATGAATGTTCAATACTCCATACCTGACTATGTGCACATATCTGCAGATTGTAGGGAACTTATCTCTCGTATTTTTGTTGCCAATCCAGCTAAGAGGATCACAATCTCAGAGATAAGACAACACCCTTGGTTTGGGAAGAACATGCCCAGAGAGATAGTTGAGGCTCAAAGAAAAGGTTACAATGATATACAGATAGACCAATTACCAAGCCAACAAAGTGTGGAAGAAATCATGCGGGTCGTAGGAGAAGCAAGGAAACCAGGGCTGGAAGACAATGGTGGAACAAGCTCATTTGGTGTTAACGTTGTTCAATGGATTGAAGAGGAGGTTGATGGTAGTGATGACTTTGTCCAAGTCCAACTTACTTGA 1023 0.4037 MEEERYEILKDLGSGNFGVTRLAKDKKTGELVAIKYIERGYKIDENVPREIVNHRSLRHPNIIKFKEVFVTPTHLAIVLEYAAGGELFDRIASAGRLSEDEARFFFQQLISGVSYCHSMEICHRDLKLENTLLDGSPAPRVKICDFGFSKSSLLHSQPKSTVGTPAYVAPEVLSRKEYDGKIADVWSCGVTLYVMLVGSYPFEDPEDPRNFRAVITKIMNVQYSIPDYVHISADCRELISRIFVANPAKRITISEIRQHPWFGKNMPREIVEAQRKGYNDIQIDQLPSQQSVEEIMRVVGEARKPGLEDNGGTSSFGVNVVQWIEEEVDGSDDFVQVQLT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0472 340 PANTHER SERINE/THREONINE KINASE 4 333 - -
Mtr5g0472 340 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Mtr5g0472 340 SUPERFAMILY Protein kinase-like (PK-like) 4 274 IPR011009 -
Mtr5g0472 340 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Mtr5g0472 340 CDD STKc_SnRK2 5 261 - -
Mtr5g0472 340 SMART serkin_6 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0472 340 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 4 333 - -
Mtr5g0472 340 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0472 340 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0472 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Mtr5g0472 340 Gene3D Transferase(Phosphotransferase) domain 1 82 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0472 Mtr-Chr5 4324033 4328239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0472 5 281 CBL-interacting serine-threonine protein kinases AT4G24400 43.357 1.07e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Mtr5g0472 Pkinase 4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0472 K14498 - gmx:547797 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0472 5 4324033 4328239 Mtr5g0472 5 4324033 4328239 ECH
Mtr5g0472 5 4324033 4328239 Mtr4g3532 4 49047609 49050544 PCT