Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0470 ATGAATCATCACAATATAACACCTATGAATTTTCAACAATTTCCTCATCTCTTCCTACAAGAGATTCCTATTTTGGGAAACTCCAGTGTAATGAAGGCTAATATTAAGAAGGAGGAGCCTAGTTGTGCACAAATGACAATCTTTTATGATGGGAAAGTAATTGTGTTTGATGATGTTCCAGCTGATAAAGCTAAAGACATCATGGACTTTTCCACCAAAGGAATTGCTAGTACTTCACAAAACCACAATAACAACTATGCTTACTCTTCATTTCTTTCTAGAAATTCTCTTCAAGACTACCCTCAAGTACCATCTATACCTGTTATTTATGATTTACCAATGACTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGGAAGGATAGAATTGCTGCAAAGGCACCTTATCAAACAAGTAATCCAGCAGCATTCCTTAATAAGCCAATTGATGAATCCATGTCATGGCTATCCTTGGCACCACAATCTGAATGTAGCTCCACCTCTGTGTTATTTTTGTAG 522 0.3678 MNHHNITPMNFQQFPHLFLQEIPILGNSSVMKANIKKEEPSCAQMTIFYDGKVIVFDDVPADKAKDIMDFSTKGIASTSQNHNNNYAYSSFLSRNSLQDYPQVPSIPVIYDLPMTRKASLHRFLEKRKDRIAAKAPYQTSNPAAFLNKPIDESMSWLSLAPQSECSSTSVLFL* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0470 173 PANTHER PROTEIN TIFY 10A 29 160 - -
Mtr5g0470 173 Pfam tify domain 40 69 IPR010399 -
Mtr5g0470 173 ProSiteProfiles Tify domain profile. 38 73 IPR010399 -
Mtr5g0470 173 SMART tify_2 38 73 IPR010399 -
Mtr5g0470 173 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 160 IPR040390 -
Mtr5g0470 173 Pfam Jas motif 113 138 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0470 Mtr-Chr5 4316331 4317615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0470 37 160 Tify Gene Family AT1G19180 41.667 4.74e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mtr5g0470 tify 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0470 K13464 - gmx:100306332 160.614