Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0464 ATGATGGAACATAATTTTAAGCACCAAATTGGTTTTATTTGTGTCATGTTGTTCTTACCTGTCTTGTGTTCCTCTCAAGACTCTTTTGTTTGCTCTAGAGCAACCTATTATGGTAGCCCAGATTGTTATGCAAATCCAAAGGGAGCTTGTGGCTATGGTGATTACGGACAGACAGTAAATGATGGCAATGTCGCAGGCGTGTCTTGGCTATGGAAGAATGGATCTGGTTGTGGTGCATGCTATCAAGTGAGGTGCAAAATACCAGAATTGTGTGATGAGAATGGAGCATATGTCGTGGTGACCGATTTTGGCGTGGGAGACAGGACAGACTTTATCATGAGCCCACGTGGCTATTCAAAATTGGGCAAAAATGGTGATGCATCTGCGGAACTTTTTAAATATGGTGTGGTGGATATAGAATATAAAAGAATCCCTTGCAAATACAATGGCTATAATATCTTGTTTAAGGTCCATGAACGCAGCAAAAATCCTCACTACTTAGCCATTCTTATTCTATATGTTGGTGGAACAAACGATGTAACTGCTGTTCAGTTGTGGCAGGAAGATTGCAAAGAGTGGAGACCAATGCGTAGGGCATTTGGAACAGTGTTTGATGCAGAGAACCCTCCAAGAGGTGAGATCAAGTTGAGGCTCCAAGTGAGTGGTAGTGCTGGGCTGTATTGGGTGGAGTCCAAGAATGTTATCTCTAGTGATTGGGAAGCTGGGTCTGTTTATGACTCACAAATTCAGTTTGATTAA 759 0.4216 MMEHNFKHQIGFICVMLFLPVLCSSQDSFVCSRATYYGSPDCYANPKGACGYGDYGQTVNDGNVAGVSWLWKNGSGCGACYQVRCKIPELCDENGAYVVVTDFGVGDRTDFIMSPRGYSKLGKNGDASAELFKYGVVDIEYKRIPCKYNGYNILFKVHERSKNPHYLAILILYVGGTNDVTAVQLWQEDCKEWRPMRRAFGTVFDAENPPRGEIKLRLQVSGSAGLYWVESKNVISSDWEAGSVYDSQIQFD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0464 252 Pfam Expansin C-terminal domain 153 235 IPR007117 -
Mtr5g0464 252 PRINTS Major pollen allergen Lol pI signature 65 76 IPR005795 GO:0005576|GO:0019953
Mtr5g0464 252 PRINTS Major pollen allergen Lol pI signature 85 95 IPR005795 GO:0005576|GO:0019953
Mtr5g0464 252 PRINTS Major pollen allergen Lol pI signature 156 171 IPR005795 GO:0005576|GO:0019953
Mtr5g0464 252 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Mtr5g0464 252 PRINTS Major pollen allergen Lol pI signature 223 240 IPR005795 GO:0005576|GO:0019953
Mtr5g0464 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Mtr5g0464 252 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Mtr5g0464 252 Gene3D - 147 248 IPR036749 -
Mtr5g0464 252 PANTHER EXPANSIN-B3 5 251 - -
Mtr5g0464 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Mtr5g0464 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mtr5g0464 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Mtr5g0464 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Mtr5g0464 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Mtr5g0464 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Mtr5g0464 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Mtr5g0464 252 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 251 - -
Mtr5g0464 252 Gene3D - 21 146 IPR036908 -
Mtr5g0464 252 SUPERFAMILY Barwin-like endoglucanases 15 150 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0464 Mtr-Chr5 4268272 4270343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0464 2 249 Expansin Gene Family AT4G17030 60.241 1.07e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0464 - - gmx:100802855 445.277