Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0461 ATGGACGTTAACCCGTCCCCTCTTTTTGAGCCTTTCAACAACAACACTGATCCTCCCACCTTGAAGCCAGGTGTTGGTACTTCATCTGGATATGGTTCGATCAAGAAAAAGAGAGGTCGACCGAGGAAATACTTCCTTGATCACGACATTACTTTGAGCTTGGGATCAGGCCCGATGCATGATGCTACAATTACTTATCCTTCTCATTCTATTGTGAAGAAGAGTACAAGGGGAAGAGGAAGGCCTCGTGGCTCTTTTAAGAAGAAGCAAGAGGTTGAAGTGTTGGGAGTTACTAACACTTCTTTCTCTCCACATTTGATTGTTGTGAACTATGGAGAGATTATGACGATGGAAGAAGGGAGGTTACTTTATAGTCTATTTTGTTACGAATACTTCTAA 399 0.4236 MDVNPSPLFEPFNNNTDPPTLKPGVGTSSGYGSIKKKRGRPRKYFLDHDITLSLGSGPMHDATITYPSHSIVKKSTRGRGRPRGSFKKKQEVEVLGVTNTSFSPHLIVVNYGEIMTMEEGRLLYSLFCYEYF* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0461 132 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 113 IPR039605 GO:0003680
Mtr5g0461 132 SMART AT_hook_2 35 47 IPR017956 GO:0003677
Mtr5g0461 132 SMART AT_hook_2 76 88 IPR017956 GO:0003677
Mtr5g0461 132 Pfam AT hook motif 35 44 IPR017956 GO:0003677
Mtr5g0461 132 Pfam AT hook motif 76 87 IPR017956 GO:0003677
Mtr5g0461 132 MobiDBLite consensus disorder prediction 1 36 - -
Mtr5g0461 132 MobiDBLite consensus disorder prediction 8 27 - -
Mtr5g0461 132 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0461 Mtr-Chr5 4254860 4255459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0461 15 113 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 39.000 1.28e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0461 - - mtr:MTR_1g038990 112.464