Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0460 ATGGATTCACATGAACTAGAACCACCACACCCTCACCCACACCACCTTCAACCTGAAAATGTTGCCCCCAATCCACTCGCAAAGTATGTACCAACCACCATGATGGAACTTGCCACAACTCAATTCCCTATTCTCAACATGGAGAGTAACCCTTCCCCTTTTTTTGATTCGTTCAACAATGGCTTTGGTCCTTCCACCTTGAAGCCATGTGTTGGTGCTTCATCTGGATCTGGTTCAATCAAGAAAAAGAGGGGCCGACCGAGGAAATACTTCCTTGATGACAACATTACTTTGAGCTTGGGATCAGGCCCGATCCATGATGCTACCATCACTTATCCTTCTAATTCTATTGTGAAGAAGAGTACAAGGGGAAGAGGAAGGCCTCGTGGCTCTTTTAAGAAGAAGCAGGAGGTTGAAGTGCTTGGAGTTACTGGCACTTCTTTCTTTCCACATTTGATCATTGTGAATCCTGGAGAGGACATTGTTGAAAAACTTATGACATGTTGTCAGGGAGGATCTAATACAGAGATGTCCATTCTTTCTGCTCATGGTTTGGTAGGCATTGTCTCCCTTCATCGGGAAGGAAGGATTGTTACTTATGAGGACAAGTTTGAACTTTTATCCCTCTTAGGCACATTAGAACCATCTGATAATAGTGGTGGTTGTAAGAAAATGAGTAACTTTAAGGTGTCTCTACTTACTCCGAATTCACACCTTTTGGCAGGCGTAGTTGTTGATAAGCTTATTGCGGCATCATTGGTAAAGATCACGGTGGGTAGTTTTACTTTGAGTGGAAAAAAGGCTAGCTCGAATAACTTGAAAGTCGGGCCTTCTTTGACGCCATCGTCCCAATTTGCTGCTCCAGCCGGTGTTATCTCTCAAGGGCCTTCATTTGGTTCCTCTAGTGGCAATGAGACTAGTCCTTTTAGTCAGGGGTCCGGAATCTACAATAATGCTAATCAGCTCATTCCAACTATATCGATGTACCAGAGACTGTTGGCTCGCCAAGTTCAATTGTAA 1020 0.4392 MDSHELEPPHPHPHHLQPENVAPNPLAKYVPTTMMELATTQFPILNMESNPSPFFDSFNNGFGPSTLKPCVGASSGSGSIKKKRGRPRKYFLDDNITLSLGSGPIHDATITYPSNSIVKKSTRGRGRPRGSFKKKQEVEVLGVTGTSFFPHLIIVNPGEDIVEKLMTCCQGGSNTEMSILSAHGLVGIVSLHREGRIVTYEDKFELLSLLGTLEPSDNSGGCKKMSNFKVSLLTPNSHLLAGVVVDKLIAASLVKITVGSFTLSGKKASSNNLKVGPSLTPSSQFAAPAGVISQGPSFGSSSGNETSPFSQGSGIYNNANQLIPTISMYQRLLARQVQL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0460 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 337 IPR039605 GO:0003680
Mtr5g0460 339 Pfam AT hook motif 122 133 IPR017956 GO:0003677
Mtr5g0460 339 Pfam AT hook motif 81 90 IPR017956 GO:0003677
Mtr5g0460 339 MobiDBLite consensus disorder prediction 1 25 - -
Mtr5g0460 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 32 337 - -
Mtr5g0460 339 CDD DUF296 150 261 IPR005175 -
Mtr5g0460 339 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Mtr5g0460 339 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Mtr5g0460 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 262 IPR005175 -
Mtr5g0460 339 ProSiteProfiles PPC domain profile profile. 145 282 IPR005175 -
Mtr5g0460 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 262 - -
Mtr5g0460 339 Gene3D - 150 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0460 Mtr-Chr5 4247572 4250431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0460 72 318 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 37.405 4.26e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0460 - - mtr:MTR_1g038990 346.28