Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0459 ATGGGTAAACAAGGACCTTGCCATCACTGTGGAGTTACAAGCACACCGCTTTGGCGCAATGGGCCACCAGAAAAGCCAATACTATGCAATGCATGTGGTTCGCGGTGGAGGACAAAGGGAACACTTGCAAATTACACACCTTTACATGCTCGAGCTGAAACTGATGATTTTGATGATCAAAAGGCTTCAAGGATGAAGAGCATATCGTTAAATAAGAACAAAGAAGTGAACTTGCTCAAACGGAAGCAGAACCACTATAATGTAGTATCTGGAGGACTTGCATCTGATTACAACCAGGGATTCCATAAGGCTTTTGATGAAGATATGAGTAATCGATCAAGTTCAGGATCAGCATTGTCTAACTCAGAAAGCTGCGCACAGTTTGGTGGCACAGATGCTAGTGATCTAACAGGACCTTCACAGTCAGTGGTCTGGGATACCACTCCCACAGTGCCTTCAAAAAAGAGGACATGTGTAGGTCGTGCAAAGCAGCCATCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACTATTCTTCATGAACAACAATCTTGTTTTTCTGAATCTTCTGATGGGGATCTTCTTTATGAAAGTGAAGCACCGATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGTTATGTAGCTCGCGACGAAGAGTCTGAGGCTAGCTCTCTTTCATTTGATAATGGACTATACCCAATGAGTGACGCATATTCTTATTCTGGAGCCGTTCTTAAAAGTGACAAGTCTCAGCTGGAAAGAGTACAAATCCTTGGAAATCATGATTCACCCTTGTGTTTAGTGGATTTAAATGATGTGGTAAACTATGAAGAGTTTACGAGGAACTTGTCATATGAAGAGCAGCAACAATTATTGAAGTTTCTTCCTGTGGTTGATACTGCTAAACTTCCTGATGGCCTTAAGGTCATGTTCAGTAGCTCTCAATTCAAGGAGAACTTAACTAATTTTCAGCAGCTTCTTGCAAAAGGTGCCTTTGATATCTCTTTGCCGGAGGTAAAACCTGAAGACTGCGAGACTTTGAAAAGATATGCACTAAATGAGTTGTCAAAGTCGAAATGGGTGGAACACTATCATAACAAGAGATGTAAAAGTAGGGCTGAAAAATCGGATGTTCCAGGATCTTCTGGTATAGCATCAACCAATGTTGCAAATGTGAAGAGAATGCGTGATAGCAGAAATCAGAACTTTCCAGAGATGAAGACAATAATGAGGAGCCCCAAAAGAATTATCACAAAGATTAGTTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCAAGCTCACACTTGCTAGATTCTTTTAACTTTGTTGAGGAGAGTTCTGATCAAGATCTGCTGCTAGAAGTGCCTTCTAATAATTCTTTTCCACAGGCAGAACTTCTGCACCCAACTTCAATCTTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACTCACATTTTGTGAACCATTAA 1500 0.412 MGKQGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQKASRMKSISLNKNKEVNLLKRKQNHYNVVSGGLASDYNQGFHKAFDEDMSNRSSSGSALSNSESCAQFGGTDASDLTGPSQSVVWDTTPTVPSKKRTCVGRAKQPSSVEKLTKDLCTILHEQQSCFSESSDGDLLYESEAPMVSVEIGHGSVLIRHPSYVARDEESEASSLSFDNGLYPMSDAYSYSGAVLKSDKSQLERVQILGNHDSPLCLVDLNDVVNYEEFTRNLSYEEQQQLLKFLPVVDTAKLPDGLKVMFSSSQFKENLTNFQQLLAKGAFDISLPEVKPEDCETLKRYALNELSKSKWVEHYHNKRCKSRAEKSDVPGSSGIASTNVANVKRMRDSRNQNFPEMKTIMRSPKRIITKISYNPKSLFPLPPDASSHLLDSFNFVEESSDQDLLLEVPSNNSFPQAELLHPTSIFGAQASTSSSSAYSHFVNH* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0459 499 Gene3D - 3 85 IPR013088 GO:0006355|GO:0008270
Mtr5g0459 499 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Mtr5g0459 499 MobiDBLite consensus disorder prediction 108 149 - -
Mtr5g0459 499 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Mtr5g0459 499 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Mtr5g0459 499 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 267 376 IPR044867 -
Mtr5g0459 499 Pfam Asx homology domain 256 359 IPR028020 -
Mtr5g0459 499 PANTHER OSJNBB0038F03.10 PROTEIN 1 249 IPR044589 -
Mtr5g0459 499 PANTHER OSJNBB0038F03.10 PROTEIN 251 498 IPR044589 -
Mtr5g0459 499 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Mtr5g0459 499 Gene3D - 265 363 IPR038108 -
Mtr5g0459 499 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Mtr5g0459 499 MobiDBLite consensus disorder prediction 110 149 - -
Mtr5g0459 499 PANTHER GATA TRANSCRIPTION FACTOR 26 1 249 - -
Mtr5g0459 499 PANTHER GATA TRANSCRIPTION FACTOR 26 251 498 - -
Mtr5g0459 499 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0459 Mtr-Chr5 4235074 4240198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0459 1 476 C2C2-Gata Transcription Factor Family AT4G17570 51.262 7.46e-146 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr5g0459 ASXH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0459 - - mtr:MTR_5g013370 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0459 5 4235074 4240198 Mtr4g3546 4 49192308 49198498 PCT