Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0441 ATGAGTATTGAAAAGGAAGATTTTGGTTTGAGCCTAAGTTTGAGCTTTCCTCAAAATCCACCAAATCCTCAATACCTTAATCTTATGTCTTCTTCAACTCATTCATATTCTCCTTCTACTTTCAATCCTCAAAAACCTTCTTGGAATGATGTTTTTACTTCTTCAGATCGGGATTCGGAGACATGCAGAATCGAAGAACGTCCTTTAATTCTCCGAGGAATCGATGTGAATCGGTTACCTTCAGGTGCTGATTGTGAAGAAGAAGCAGGAGTTTCATCACCAAACAGCACCGTTTCAAGTGTGAGTGGTAAAAGAAGCGAAAGAGAAGTTACCGGTGAAGATCTTGACATGGAAAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCAAGGAAAAAACTTAGACTCACCAAAGACCAATCAATCATTCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCCAAACAAAAATTGGCACTTGCAAAACAATTGGGACTTCGTGCTAGACAAGTTGAAGTTTGGTTTCAAAATCGTAGAGCAAGGACTAAGTTGAAGCAAACAGAGGTAGATTGTGAATTTTTGAAAAGATGTTGTGAGAATCTAACGGATGAAAATAGACGGTTGCAAAAAGAAGTGCAAGAGTTAAGAGCATTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCAACAACACTTACCATGTGCCCCTCTTGTGAGCGTGTCGCTGTTCCATCATCTGCCGTTGATGCTGCCACGCGTCGTCATCCTATGGCTTCAAATCACCCTCGTACGTTTTCCGTGGGACCATGGGCCACAGCTGCTCCAATCCAACATAGGACCTTTGATACACTCCGTCCTAGATCTTAA 891 0.413 MSIEKEDFGLSLSLSFPQNPPNPQYLNLMSSSTHSYSPSTFNPQKPSWNDVFTSSDRDSETCRIEERPLILRGIDVNRLPSGADCEEEAGVSSPNSTVSSVSGKRSEREVTGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRRHPMASNHPRTFSVGPWATAAPIQHRTFDTLRPRS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0441 296 MobiDBLite consensus disorder prediction 12 43 - -
Mtr5g0441 296 MobiDBLite consensus disorder prediction 90 105 - -
Mtr5g0441 296 SMART HOX_1 133 195 IPR001356 GO:0003677
Mtr5g0441 296 PRINTS Lambda-repressor HTH signature 162 171 IPR000047 GO:0003677
Mtr5g0441 296 PRINTS Lambda-repressor HTH signature 171 187 IPR000047 GO:0003677
Mtr5g0441 296 MobiDBLite consensus disorder prediction 1 43 - -
Mtr5g0441 296 MobiDBLite consensus disorder prediction 106 136 - -
Mtr5g0441 296 PANTHER - 3 287 - -
Mtr5g0441 296 Coils Coil 190 227 - -
Mtr5g0441 296 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Mtr5g0441 296 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 287 - -
Mtr5g0441 296 Gene3D - 139 189 - -
Mtr5g0441 296 SMART halz 191 234 IPR003106 GO:0006355|GO:0043565
Mtr5g0441 296 Pfam Homeodomain 135 189 IPR001356 GO:0003677
Mtr5g0441 296 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Mtr5g0441 296 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355|GO:0043565
Mtr5g0441 296 Pfam HD-ZIP protein N terminus 4 109 IPR006712 GO:0005634
Mtr5g0441 296 MobiDBLite consensus disorder prediction 84 136 - -
Mtr5g0441 296 CDD homeodomain 135 192 IPR001356 GO:0003677
Mtr5g0441 296 SUPERFAMILY Homeodomain-like 126 192 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0441 Mtr-Chr5 4063086 4065128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0441 1 296 Homeobox Transcription Factor Family AT4G16780 65.101 3.34e-110 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr5g0441 HD-ZIP_N 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0441 K09338 - gmx:100813367 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0441 5 4063086 4065128 Mtr4g3564 4 49394994 49396763 PCT