Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0437 ATGCAACAGGTTTCTGTCTCTTCCTCCTCCATTGAAGATAACAAAACAAAAAACAATGGTGATAATGGGAAGCACCCATTGTATCGTGGAGTAAGAATGCGTAGTTGGGGAAAATGGGTTTCAGAAATTAGAGAGCCCAAGAAAAAATCAAGAATTTGGCTAGGCACTTATCCAACACCCGAGATGGCAGCTCGAGCCCATGACGTTGCGGCCCAAGCCATTAAAGGCAGCTCGGCTTACCTCAATTTCCCCGAATTAGCTCAACAACTTCCACGCCCGACCACTAATTCTCCTAAGGACATTCAAGCCGCTGCTGCTAAGGCAGCGACTATGGGCTCTCTCCACGAAGCCCAGGACCAAGACCACGACATACAAGAAACGTTAAATGATGAGGATGATACATTCTACGACCTCCCTGATCTCTTACTAGATTCAAATAAGAGTTCAAGTGAGTTTCATTATTCCTCCATGTCGTGGCTCGTGGCTGGAGCTGAATATCCAAACCCAAGTTTTGGGCTGGATGAGCCTTTCCCGTGGGAACCTTAG 546 0.4689 MQQVSVSSSSIEDNKTKNNGDNGKHPLYRGVRMRSWGKWVSEIREPKKKSRIWLGTYPTPEMAARAHDVAAQAIKGSSAYLNFPELAQQLPRPTTNSPKDIQAAAAKAATMGSLHEAQDQDHDIQETLNDEDDTFYDLPDLLLDSNKSSSEFHYSSMSWLVAGAEYPNPSFGLDEPFPWEP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0437 181 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Mtr5g0437 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 163 - -
Mtr5g0437 181 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mtr5g0437 181 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Mtr5g0437 181 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Mtr5g0437 181 MobiDBLite consensus disorder prediction 1 16 - -
Mtr5g0437 181 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Mtr5g0437 181 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Mtr5g0437 181 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Mtr5g0437 181 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Mtr5g0437 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 14 163 - -
Mtr5g0437 181 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0437 Mtr-Chr5 4001220 4002014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0437 15 177 AP2-EREBP Transcription Factor Family AT2G44940 47.115 1.31e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr5g0437 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0437 - - gmx:100101914 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0437 5 4001220 4002014 Mtr4g3571 4 49464729 49466478 PCT