Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0435 ATGTCAGGTGAAGAAGAGGTTGTTGCAGTTGAGCCTGTTGTTGCTGCTGCAATTCCAGGTGAGCCAATGGACATCATGACTGCCCTGCAGCTGGTGCTTAGAAAGTCTCGTGCTTATGGTGGTCTTGCACGAGGTCTTCATGAAGGTGCAAAAGTGATTGAGAAGCATGCTGCACAGCTTTGTGTTCTAGCTGAAGATTGTGACCAACCTGATTATGTCAAATTGGTGAAAGCCCTCTGCGCAGAGCACAATGTTAGCTTGTTGACAGTTCCAAGTGCAAAGACACTTGGAGAGTGGGCTGGTTTGTGCAAGATTGATTCAGAAGGTAAAGCTAGGAAGGTTACCGGATGCTCTTGTGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTTTGCAACATGTAAAAGCTAACTAA 429 0.4569 MSGEEEVVAVEPVVAAAIPGEPMDIMTALQLVLRKSRAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAN* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0435 142 ProSitePatterns Ribosomal protein S12e signature. 28 46 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mtr5g0435 142 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mtr5g0435 142 SUPERFAMILY L30e-like 22 140 IPR029064 -
Mtr5g0435 142 Gene3D - 5 142 IPR029064 -
Mtr5g0435 142 PRINTS Ribosomal protein S12E family signature 32 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mtr5g0435 142 PRINTS Ribosomal protein S12E family signature 46 62 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mtr5g0435 142 PRINTS Ribosomal protein S12E family signature 87 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mtr5g0435 142 PRINTS Ribosomal protein S12E family signature 112 125 IPR000530 GO:0003735|GO:0005840|GO:0006412
Mtr5g0435 142 PANTHER 40S RIBOSOMAL PROTEIN S12 1 141 - -
Mtr5g0435 142 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 28 121 IPR004038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0435 Mtr-Chr5 3982201 3984198 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0435 18 142 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 1.05e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0435 K02951 - gmx:100500093 256.914