Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0420 ATGGGTAAGGTTCACGGTTCATTGGCCCGTGCCGGTAAAGTTAGGGGACAAACACCCAAGGTAGCTAAGCAAGACAAGAAGAAGCAGCCCCGTGGCCGTGCTCACAAGCGTATGCAGTACAATCGCAGATTCGTCACCGCTGTTGTTGGATTTGGAAAGAAGAGGGGACCCAACTCATCTGAGAAGTAA 189 0.5132 MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK* 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0420 62 MobiDBLite consensus disorder prediction 1 40 - -
Mtr5g0420 62 Pfam Ribosomal protein S30 3 59 IPR006846 GO:0003735|GO:0005840|GO:0006412
Mtr5g0420 62 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 1 62 - -
Mtr5g0420 62 PANTHER 40S RIBOSOMAL PROTEIN S30 1 62 - -
Mtr5g0420 62 MobiDBLite consensus disorder prediction 26 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0420 Mtr-Chr5 3836681 3837578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0420 1 62 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 95.161 1.13e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0420 K02983 - han:110893773 127.102