LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g0416	ATGATGGAACAAAACTCAGAACAAGACAATCGTGAACTCTACGCAATCCTCAACCTCTCACCCGAATCCTCCGACGAAGAAATCCGCAAAGCTTATCGTCAATGGGCACAAGCTTATCATCCAGACAAGTACCAAAATCCTCTCATGAAAGATGCTGCTACTGAGAATTTTCAACGAGTTTGTGAAGCTTATGAGATTCTTTCAGATCCGAATAAGAGACAGGTTTATGATATTTATGGTATGGAAGGGTTGAAATCTGGTTTGGAACTTGGTTCCAGGTTGGATAGAGCTGAAGAGATTAAAGCCGAGTTGGAGAGGTTGAAGAGAAGAAGGGAACATGAGAAGATGGTGGCTAATTTTCAGTCTTCCGGGACGATTTTGGCTAATTTGTCCATGCCGCAGTATTTAGATGGTGATGGTCTCTTTAGAGGAATGGCAATGACGAGTGAAGTTCAGTCTCAATTGTCAAAACGAAATGTTGTTGGGATTGGCGGCAATTTAGCAGTTGAAGGACATCAAGGTGGTGGAGCTGCTAATGTTGTATTAAGTCATCAACTTTCCGAGGCTTCGTCAATAGAATTTATTGCTTCAGCCGGTTTACGTTCACTAATTGGAGTGCAGACATCACGCGTTATATCATCACACTCATCTGCAACAGCAGGATTATCAATGTCTTTGAGAGATGGTTCATTGAATCTTTCTAATGCATGGACCCGCCAACTGTCAGAAACAACAAATGGACATATACAACTCATGTTGGGATCACAACCATCTGTAGCTGTAGGGTGGAAGAAAGAAGATGAGAGAAGGACTGCCACTGCAGAAGTGAAGCTCGGCACAGGTCCTTTCGAGACATCAGCTCGGTATACTCATCGCTTTTCTTCTAAATCTCATGGCTGCATTGGAGGAAGATTTGGGAGTTCTTCCATTGAGATGGAAGTTGGTGGAGGAAGGAAGTTATCCAAATTCAGTACTGTGCGCTGGTTGTATGTAGTAGGACTTCAGGGTATTTCCTGGAGATTTGAATTCTGTCGTGGGGGTCAGAAGTTGATTATTCCTGTTTTGCTGACGAATCATTTGAACCCTATGTTTGCTACTGGAGCATTAGTTATTCCAGCATCTTTTTACTTTGTTCTGAAGAAATTTGTCATTAAACCGTATTACCGTAAAAGGAATAAGCAGAAGGCTCTAGAGAAGGAGGGAAAAACTTCTACCCAGGTTCAAGAAGCAAGGGCAGCAGCAGAAAAAGCTCAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACGAGCGGACTGGTTATTATGAAAGCACTATATGGAAGTGATACAATTTTGAACAACTTGTATTCGTCAAATGGAACAAGTTTTGAATCTACTTCAGGAGTCATTGATGTTACAACACCTCTGAATTTTCTAGTTAATGATTCTGGTCAACTTAAGCTTCACGAAGGTGTAAAGAAATCAGGAATCATGGGATTTTGTGATCCTTGTCCAGGAGAAACTAAATTGTTGTATGTAGAGTACGCTCATGCAGGCAATCAACACAAGGTATTGGTTGGTGACTATGAAGAATTAGTGATACCCCAGGGCATCCACAGGATATAA	1623	0.4122	MMEQNSEQDNRELYAILNLSPESSDEEIRKAYRQWAQAYHPDKYQNPLMKDAATENFQRVCEAYEILSDPNKRQVYDIYGMEGLKSGLELGSRLDRAEEIKAELERLKRRREHEKMVANFQSSGTILANLSMPQYLDGDGLFRGMAMTSEVQSQLSKRNVVGIGGNLAVEGHQGGGAANVVLSHQLSEASSIEFIASAGLRSLIGVQTSRVISSHSSATAGLSMSLRDGSLNLSNAWTRQLSETTNGHIQLMLGSQPSVAVGWKKEDERRTATAEVKLGTGPFETSARYTHRFSSKSHGCIGGRFGSSSIEMEVGGGRKLSKFSTVRWLYVVGLQGISWRFEFCRGGQKLIIPVLLTNHLNPMFATGALVIPASFYFVLKKFVIKPYYRKRNKQKALEKEGKTSTQVQEARAAAEKAQKLQQNVANRKRNKQLETSGLVIMKALYGSDTILNNLYSSNGTSFESTSGVIDVTTPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGETKLLYVEYAHAGNQHKVLVGDYEELVIPQGIHRI*	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g0416	540	PRINTS	DnaJ domain signature	14	32	IPR001623	-
	Mtr5g0416	540	PRINTS	DnaJ domain signature	32	47	IPR001623	-
	Mtr5g0416	540	PRINTS	DnaJ domain signature	52	72	IPR001623	-
	Mtr5g0416	540	PRINTS	DnaJ domain signature	72	91	IPR001623	-
	Mtr5g0416	540	Pfam	DnaJ-like protein C11, C-terminal	386	534	IPR024586	-
	Mtr5g0416	540	PANTHER	CHAPERONE PROTEIN DNAJ 13	1	540	IPR042162	-
	Mtr5g0416	540	Coils	Coil	90	117	-	-
	Mtr5g0416	540	ProSitePatterns	Nt-dnaJ domain signature.	57	76	IPR018253	-
	Mtr5g0416	540	Gene3D	DnaJ domain	1	94	IPR036869	-
	Mtr5g0416	540	Coils	Coil	407	430	-	-
	Mtr5g0416	540	SUPERFAMILY	Chaperone J-domain	9	88	IPR036869	-
	Mtr5g0416	540	CDD	DnaJ	12	69	IPR001623	-
	Mtr5g0416	540	Pfam	DnaJ domain	13	77	IPR001623	-
	Mtr5g0416	540	ProSiteProfiles	dnaJ domain profile.	12	80	IPR001623	-
	Mtr5g0416	540	SMART	dnaj_3	11	72	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g0416	Mtr-Chr5	3782484	3793507	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g0416	2	79	C2H2 Transcription Factor Family	AT1G74250	44.048	5.81e-10	60.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr5g0416	5	3782484	3793507	Mtr5g0416	5	3782484	3793507	ECH