Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0396 ATGAACAATTTCTCACACGTTCCTCCTGGATTTCGTTTCCATCCCACTGATGAAGAACTTGTTGATCACTACCTTAGGAAAAAGATAGCTTCTAAAAGGATTGATCTTGATATCATTAAAGATGTTGATCTCTATAAGATTGAGCCGTGGGATCTACAAGAGTTATGCAAAATAGGAAGTGATGAACAAACTGAATGGTACTTCTTTAGTCATAAAGATAAGAAGTATCCAACGAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGAAGAGACAAAGCAATTTATTCTAACCATATTTGTCTGATTGGAATGAGAAAGACTCTTGTCTTCTATAAAGGAAGAGCACCTAATGGTCAAAAATCTGATTGGATCATGCATGAGTATCGCTTAGAAACAAATGAAAATGGAACTACTCCTCAGGAAGAAGGATGGGTTGTGTGTAAAGTGTTCAAGAAACGAATAGCTACAACAATGAGGAAAATGGACGATTCACCATGTTGGTATGATGATCAAGTATCATTCATGCAATCAGAGCTTGAATCCCCAAGCAGAATTTCTTCTCATCACCCTTATAATGCATCATACCAACATCAACAACAGCATTATCCTTGCAAACAAGAGTTGGATCAATTGCAATACAATATACACATTAATAATAATGATGCTAATAATTTCCTACAACTTCCACAACTAGAAAACCTCAATTCTCCTATGCAATGCTCATTATCAACACATTCAATGACTCAAGAACAATATGGCCAGCAACAAAGTATGCAAATGCTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAATGAATGGAAAGCACTAGACAAATTTGTTGCTTCTCGTCTAAGTCAAGATCAAGATCATGCTTCTAAGGGAACTAGTAGTTATTGTAATGTGGCTCAACAAATTGCTTTGCTATCAAATGATGAATCCAAAAAATCAGAAACTGGTGGCCAGGAACATGTGACTTCAATCTCCAACTCAAATTGTCAGATTGACACGTGGAAATGA 1050 0.3657 MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWVVCKVFKKRIATTMRKMDDSPCWYDDQVSFMQSELESPSRISSHHPYNASYQHQQQHYPCKQELDQLQYNIHINNNDANNFLQLPQLENLNSPMQCSLSTHSMTQEQYGQQQSMQMLYGGSNDLQAVVEQSNEWKALDKFVASRLSQDQDHASKGTSSYCNVAQQIALLSNDESKKSETGGQEHVTSISNSNCQIDTWK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0396 349 PANTHER OS02G0643600 PROTEIN 4 331 - -
Mtr5g0396 349 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 331 - -
Mtr5g0396 349 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Mtr5g0396 349 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Mtr5g0396 349 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Mtr5g0396 349 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0396 Mtr-Chr5 3589359 3593832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0396 1 346 NAC Transcription Factor Family AT1G62700 54.950 3.88e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr5g0396 NAM 5.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0396 - - mnt:21401962 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0396 5 3589359 3593832 Mtr5g0396 5 3589359 3593832 ECH
Mtr5g0396 5 3589359 3593832 Mtr4g3623 4 49992724 49998952 PCT