Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0392 ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCAGCATTCTCTTCCGGCGATTTCTCAACGGCCATCCGTCACTTCTCTGAAGCCATCGATCTTTCCCCCACCAACCACGTCCTCTACTCCAACCGATCCGCCGCTTACGCTTCTCTCCAGAATTACACCGACGCTTTAACCGATGCCAAGAAAACCGTCGAACTCAAACCTGATTGGTCAAAGGGTTACAGCCGTCTCGGTGCCGCTCATCTCGGTCTTTCTCAATACGATGACGCCGTTTCAGCTTACAAGAAAGGGTTAGAAATTGATCCTAATAATGAACCCTTGAAATCAGGTTTAGCCGATGCTCAAAAAGCCGCGGCGGCGAGTTTTTCTAGGCCACGTTCTGCGCCGGGTGCTAATCCCTTTGGTGATGCCTTTTCTGGACCAGAGATGTGGGCGAAACTCACGGCTGATCCTACAACTAGGGTTTATCTTCAACAACCTGATTTTGTGAAGATGATGCAAGATATTCAAAAGGATCCCAATAATTTGAATTTGTATTTGAAGGATCAAAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAAATTGGAAGAGGTGGTGATGATGTGGATATGCCCGATATGCCTTCCAGCTCGGAGAGGAAGAGAGCTGCTGAACCTGAGGTGACAAAGCAGCCGGAGGTTGAGCCTGAGCCGGAACCGGAGCCAATGGAGGTGGCTGATGAGGAGAAGGAAGTGAAGCAGAGGAAAGCTGATGCGCAGAAGGAAAAGGAGGCTGGTAATGCTGCGTATAAGAAGAAGGATTTTGATACCGCGATTCAGCATTATTCGAAAGCTTTGGAATTGGATGATGAGGATGTTTCCTTTCTCACTAACCGTGCTGCTGTATACTTGGAAATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGACGAGAGTTAAGAGCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAACTGCCATGGGTAAAACGGCAAAATGCTCTAAAGATTATGAACCTGTCATTGAGACTTACCAAAAAGCGCTTACAGAGCACCGTAACCCAGACACCCTGAAGAAACTCAATGAAGCTGAGAAGGCCAAGAAAGAACTAGAACAACAAGAATACTTCGATCCAAATTTGGCTGATGAGGAGAGAGAAAAAGGGAATGAATACTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACAGAGTCTATAAAAAGAAACCCACAAAATCCTAAGGCTTATAGTAACAGAGCTGCATGTTACACAAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAGCTTGATCCGACCTTCACCAAGGGTTATACTCGGAAGGGTGCGGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATATCAGGAAGGGTTGAAACATGATGCAAACAACCAGGAATTGCTTGAAGGGGTTCGAAGTTGTGTGAAGCAAATTAATAGAACCAGTCGTGGAGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCTAAGGCAATGTCAGATCCAGAGATTCAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCGAAGGCTGCACAGGAACATACCAAGAACCCGGGTGTGATGGACAAGATCCAAAAGCTGATCAGTGCCGGAATTGTCCAGATGAAGTAA 1746 0.4519 MADEAKAKGNAAFSSGDFSTAIRHFSEAIDLSPTNHVLYSNRSAAYASLQNYTDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDDAVSAYKKGLEIDPNNEPLKSGLADAQKAAAASFSRPRSAPGANPFGDAFSGPEMWAKLTADPTTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIGRGGDDVDMPDMPSSSERKRAAEPEVTKQPEVEPEPEPEPMEVADEEKEVKQRKADAQKEKEAGNAAYKKKDFDTAIQHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRADYKMIARALTRKGTAMGKTAKCSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPNLADEEREKGNEYFKQQKYPEAIKHYTESIKRNPQNPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQEGLKHDANNQELLEGVRSCVKQINRTSRGDVTPEELKERQAKAMSDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0392 581 SUPERFAMILY TPR-like 391 504 IPR011990 GO:0005515
Mtr5g0392 581 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Mtr5g0392 581 SMART CBM 530 569 IPR006636 -
Mtr5g0392 581 SMART CBM 139 178 IPR006636 -
Mtr5g0392 581 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Mtr5g0392 581 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Mtr5g0392 581 MobiDBLite consensus disorder prediction 207 231 - -
Mtr5g0392 581 Pfam Tetratricopeptide repeat 7 61 - -
Mtr5g0392 581 Gene3D Tetratricopeptide repeat domain 250 386 IPR011990 GO:0005515
Mtr5g0392 581 Gene3D - 511 581 - -
Mtr5g0392 581 SUPERFAMILY TPR-like 252 380 IPR011990 GO:0005515
Mtr5g0392 581 SMART tpr_5 36 69 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 392 425 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 2 35 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 70 103 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 328 365 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 287 320 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 253 286 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 460 493 IPR019734 GO:0005515
Mtr5g0392 581 SMART tpr_5 426 459 IPR019734 GO:0005515
Mtr5g0392 581 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Mtr5g0392 581 Coils Coil 364 384 - -
Mtr5g0392 581 ProSiteProfiles TPR repeat profile. 253 286 IPR019734 GO:0005515
Mtr5g0392 581 Coils Coil 237 259 - -
Mtr5g0392 581 Pfam STI1 domain 140 193 IPR041243 -
Mtr5g0392 581 Pfam STI1 domain 522 573 IPR041243 -
Mtr5g0392 581 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 580 - -
Mtr5g0392 581 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Mtr5g0392 581 ProSiteProfiles TPR repeat profile. 460 493 IPR019734 GO:0005515
Mtr5g0392 581 Pfam TPR repeat 399 440 - -
Mtr5g0392 581 Pfam TPR repeat 260 301 - -
Mtr5g0392 581 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Mtr5g0392 581 Gene3D Tetratricopeptide repeat domain 391 510 IPR011990 GO:0005515
Mtr5g0392 581 Gene3D - 130 196 - -
Mtr5g0392 581 PANTHER TPR REPEAT CONTAINING PROTEIN 1 580 IPR045248 GO:0006457|GO:0030544|GO:0051879
Mtr5g0392 581 MobiDBLite consensus disorder prediction 240 261 - -
Mtr5g0392 581 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Mtr5g0392 581 MobiDBLite consensus disorder prediction 199 261 - -
Mtr5g0392 581 ProSiteProfiles TPR repeat profile. 392 425 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0392 Mtr-Chr5 3568696 3573308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0392 391 487 U-box Gene Family AT3G07370 29.897 9.52e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0392 K09553 - gmx:100816776 946.036