Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0391 ATGAATGATCTAATGACAAAATCATTCACCAACTATGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTTGATTTAGAAGCTGGTCTTCATCAAAAACAAGGTGGTGTTGAATTAACAAGATCTTCATTGACCCATTTGGAAACTGATATGAATTTGTTCTTGGAAGAGGCAGAGAAAGTGAGAACAGAAATGGGTGAAATTCGTGATATACTAACAAAGCTTGAACAAGCAAATGAAGAGAGCAAGAGTCTTCACAAAACTGAAGCTTTGAAAGCATTGAGGGAAAGAATTAATACTGATATTGTGACTGTTTTGAAGAAAGCAAAGTGTATTAGGACTCAACTTGAAGAAATGGATCGTGCTAATGCTGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCAATTTATAGAACTAGAATTGCTGTTACTAATGGCTTGCGTAAGAAACTCAAGGAGCTTATGATGGAGTTTCAGGGACTTAGGCAGAAAATGATGAGTGAATACAAAGAAACAGTAGGGAGAAGGTATTACACAGTGACAGGGGAACATGCTGATGAAGAGGTAATTGAGAAGATAATTTCAAATGGAGATGATGAAAGTTTCTTAGGGAAGGCAATACAAGAACATGGAAGAGGAAAGGTTCTGGAAACTGTGGTTGAGATACAAGACAGACATGATGCTGCTAAAGAGATTGAGAAGAGTTTGTTGGAACTTCATCAAATATTTTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATGCTTCTCATTATGTTAAAGATGGTACAAAGAATCTTCACGGTGCTAAACAGTATCAAAAAAGTAGCAGGAAGTGGATGTGCATTGGGATTATACTCTTGCTTATTCTGGTTCTCATCATTGTTATTCCCATTGTCACTAGTTTCAGCAGTTCTTGA 963 0.3655 MNDLMTKSFTNYVDLKKAAMKDEVDLEAGLHQKQGGVELTRSSLTHLETDMNLFLEEAEKVRTEMGEIRDILTKLEQANEESKSLHKTEALKALRERINTDIVTVLKKAKCIRTQLEEMDRANAANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQKMMSEYKETVGRRYYTVTGEHADEEVIEKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMCIGIILLLILVLIIVIPIVTSFSSS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0391 320 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 313 - -
Mtr5g0391 320 Pfam Syntaxin 54 257 IPR006011 GO:0016020
Mtr5g0391 320 Gene3D - 51 179 - -
Mtr5g0391 320 Coils Coil 147 167 - -
Mtr5g0391 320 SMART SynN_4 46 173 IPR006011 GO:0016020
Mtr5g0391 320 Pfam SNARE domain 259 310 IPR000727 -
Mtr5g0391 320 CDD SNARE_syntaxin1-like 221 281 - -
Mtr5g0391 320 SMART tSNARE_6 217 284 IPR000727 -
Mtr5g0391 320 SUPERFAMILY t-snare proteins 49 277 IPR010989 GO:0016020|GO:0016192
Mtr5g0391 320 Coils Coil 58 88 - -
Mtr5g0391 320 CDD SynN 54 198 IPR006011 GO:0016020
Mtr5g0391 320 PANTHER SYNTAXIN 5 313 IPR045242 -
Mtr5g0391 320 Gene3D - 218 317 - -
Mtr5g0391 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 222 284 IPR000727 -
Mtr5g0391 320 ProSitePatterns Syntaxin / epimorphin family signature. 228 268 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0391 Mtr-Chr5 3563542 3565215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0391 1 320 SNARE and Associated Proteins AT1G08560 65.421 1.22e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0391 K08486 - gmx:100816016 507.294