Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0372 ATGGCGTTGGTGGGCCCTAATCCATTCGAAAACACCGTCACAAACACCATGGTGGAACTCACCAATGCTCGAACCCCACCATGCAACATGAACACAAACTCTTTCTCTCATTCTGAGCCTTTCAACAACAACAATGTTCGGTCCAACTTGCACTCGAGTGTGAATGCTTCCTTCGGCTCTAGTTCATTCAAGAAAAAGAGGGGCCGGCCGAGGAAGTACTTTCCTGATGGAAACATTACTTTGGGCTCAAGCTCGGTCCCCACCCAAAATGCTGCCATTATTTCTCCTTCTTCCTTAGGCTCTTGTTCAATCAAGAAAAAGAGGGGCCGACCGAGGAAGTACTTCCTTAATGGCAACATTACTTTGGGTTCAAGCTCGGTCCCAACCCAAAATGCTGCCATTATTTCTCCTTCTTCCACTATGAAGAAGAATCAGCAAGTTGAAGTGCTTGGAGATAATGGCACTGATTTCTCTGCACATTTGATCACTGTGAACCATGGAGAGAATATTGTTGCAAAACTTGCAAGCTGTTGTCAAGGAGGACCTAACACAGAGATATGCATTCTTTCAGCTCAGGGTTTAGTTGGCATTGCCTCCTTTCAACAATCAGGAGTCATTGTTACTTATGAGGTTGTACATTTTCCATCCTTTTATTAG 657 0.446 MALVGPNPFENTVTNTMVELTNARTPPCNMNTNSFSHSEPFNNNNVRSNLHSSVNASFGSSSFKKKRGRPRKYFPDGNITLGSSSVPTQNAAIISPSSLGSCSIKKKRGRPRKYFLNGNITLGSSSVPTQNAAIISPSSTMKKNQQVEVLGDNGTDFSAHLITVNHGENIVAKLASCCQGGPNTEICILSAQGLVGIASFQQSGVIVTYEVVHFPSFY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0372 218 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 101 211 - -
Mtr5g0372 218 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 25 87 - -
Mtr5g0372 218 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Mtr5g0372 218 SMART AT_hook_2 64 76 IPR017956 GO:0003677
Mtr5g0372 218 Pfam AT hook motif 105 114 IPR017956 GO:0003677
Mtr5g0372 218 Pfam AT hook motif 64 75 IPR017956 GO:0003677
Mtr5g0372 218 ProSiteProfiles PPC domain profile profile. 154 218 IPR005175 -
Mtr5g0372 218 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 101 211 IPR039605 GO:0003680
Mtr5g0372 218 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 87 IPR039605 GO:0003680
Mtr5g0372 218 MobiDBLite consensus disorder prediction 55 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0372 Mtr-Chr5 3428408 3433200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0372 59 210 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 35.256 4.32e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0372 - - mtr:MTR_5g014360 186.422