Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0366 ATGCAAAGTTCAGATACTTCAACAGATTACCATGCAGCTCCAAGAACTAGAATCCCAGCTTTTACCGGTGGATTCATGGCTGATTCAATGTCTCAGGAAGGCATTTTGCCGCTGCAGACGATGGTAATTGGCAAATTGTTTGCAAGCTCAGTTGGTACTAATTTGACTCCTCATATTATCACAGTTAATCCTAGAGAGGATGTTGCTATGAAGGTAATGACATTTTGTCCACAAGAAGCTATACGCATTCTATATGCAAGTGGAGTCATTTCAAGAGCCATCGTCAATCGGCCTCAAGCGTCTGGAACATTATACAATTTACATATGAGATCTAGTGGCATGAATGTTTCTTTTGTGGATCTAGATGGAAATGTTGTTGGTGGTCGCGTAGCTGGTCCATTGGTGGTTGCAAGTCCTGCAGCTGTAATGGTAGTTACTTTTCTTGCAAGTGAACAACATGAGCAGAAGCTAAACACACAGAAGAATGAGGTAATTTCAACAGTAACGCCAACTGTAGCTGCTCGCATGTCTTCTGCTGGTCCAATGCTTAATAATTTGTCATCTTCATCTTGCTTCCATGGAGATAATCAGTATAGAATCCCTCCCAGCAGTGGCAGATACTAG 624 0.4199 MQSSDTSTDYHAAPRTRIPAFTGGFMADSMSQEGILPLQTMVIGKLFASSVGTNLTPHIITVNPREDVAMKVMTFCPQEAIRILYASGVISRAIVNRPQASGTLYNLHMRSSGMNVSFVDLDGNVVGGRVAGPLVVASPAAVMVVTFLASEQHEQKLNTQKNEVISTVTPTVAARMSSAGPMLNNLSSSSCFHGDNQYRIPPSSGRY* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0366 207 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 108 174 - -
Mtr5g0366 207 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 41 104 - -
Mtr5g0366 207 Pfam Plants and Prokaryotes Conserved (PCC) domain 57 147 IPR005175 -
Mtr5g0366 207 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 108 174 IPR039605 GO:0003680
Mtr5g0366 207 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 104 IPR039605 GO:0003680
Mtr5g0366 207 SUPERFAMILY AF0104/ALDC/Ptd012-like 54 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0366 Mtr-Chr5 3385066 3386652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0366 39 179 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 40.000 9.52e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0366 - - mtr:MTR_5g011590 200.675