Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0362 ATGGATCAAATAACATCACATGGACATTCACTTCCTCCACCTTTCCACACAGCAAGAGATCTTCATCTTCACCATCAACACCAACAGCAGCAACAACAACAACAACACCATCAATTCCACACTTTACAGCAGCAGCAACAAACCACAGATCAAGATGAACAAAGCGGAAGTAGCAGCGGCGGTGGACTCAACCTCACAAACCGAGAAGAAAACAGCAACAACAAGTTCAGCACAGATTTTAGCCCCAAGTTAGAATCCGGAGGAGGTGGTTCCGGTGGCGACACCGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAAAACAAACCAAAACCACCGATTATCATCACACGTGACAGCGCAAACGCCTTGAAAACTCACGTGATGGAAGTTGCAGACGGTTGTGACGTTGTTGAAAGTGTCAACAACTTCGCTAGACGCCGTCAAAGAGGCGTTTGCATCATGAGTGGGACAGGGACGGTTACAAACGTGACACTAAGGCAACCGGCTTCTCCTGGAGCTGTTGTTACACTTCATGGAAGGTTCGAGATTCTTTCGCTGGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGTTTGACCATATATTTAGCGGGCGGACAAGGGCAGGTTGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCTGTTGTTATTATGTCTGCTTCTTTTAGTAACGCTGCTTATGAGAGACTTCCTTTGGAAGATGATGATGGTTCTTCTATTCAACAACTTCAAGGTGGTGGTGGTGGTGGTTCTCCAAGTGGTGGTGGCGGTGGTGTTCAGCAACAACAACAACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCATCCTCCTAATTCTAATCCTAATCTTAATCCTAATCTTCTCGGTCAGATGCCTTCTGATAATTTCTGGCCAACCGGGCGTTCTCCGTATTGA 978 0.4703 MDQITSHGHSLPPPFHTARDLHLHHQHQQQQQQQQHHQFHTLQQQQQTTDQDEQSGSSSGGGLNLTNREENSNNKFSTDFSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDDDGSSIQQLQGGGGGGSPSGGGGGVQQQQQQLLGDSTAPLFQAMHPPNSNPNLNPNLLGQMPSDNFWPTGRSPY* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0362 325 PIRSF ESCAROLA 13 317 IPR014476 GO:0003680
Mtr5g0362 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 325 IPR014476 GO:0003680
Mtr5g0362 325 SUPERFAMILY AF0104/ALDC/Ptd012-like 124 252 - -
Mtr5g0362 325 Pfam Plants and Prokaryotes Conserved (PCC) domain 128 241 IPR005175 -
Mtr5g0362 325 MobiDBLite consensus disorder prediction 253 325 - -
Mtr5g0362 325 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 6 325 - -
Mtr5g0362 325 MobiDBLite consensus disorder prediction 1 118 - -
Mtr5g0362 325 MobiDBLite consensus disorder prediction 27 81 - -
Mtr5g0362 325 CDD DUF296 128 195 IPR005175 -
Mtr5g0362 325 Gene3D - 127 261 - -
Mtr5g0362 325 MobiDBLite consensus disorder prediction 272 325 - -
Mtr5g0362 325 ProSiteProfiles PPC domain profile profile. 124 261 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0362 Mtr-Chr5 3348704 3350454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0362 1 325 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 53.977 5.45e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0362 - - gmx:100781436 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0362 5 3348704 3350454 Mtr5g0362 5 3348704 3350454 ECH