Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0335 ATGCAAGAACCAAGCTTAGGGATGATGCAGGGTAGTGGTGGTGGTTACGGCGGAGATGGTGGCGGTGAGAACAGACAACTGAAGGCGGAGATAGCAACACATCCTTTGTATGAACAGCTTCTGTCTGCACATGTAGCATGTCTTCGAGTTGCTACTCCTATAGATCAGTTACCATTGATTGATGCTCAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCGCCTCATGATCGTCAACAACTCGACAACTTCCTCGCACAATATTTGATAGTTTTGTGTACATTCAAAGAACAACTTCAGCAACATGTCAGAGTTCATGCTGTTGAAGCTGTTATGGCTTGCCGTGATATTGAAAATACCTTACAAGCCCTCACAGGAGTGAGTTTGGGAGAAGGAAGTGGTGCGACAATGTCGGATGATGAAGATGAACAATTGCAGATGGATTATGGTTTAGATAATCAGTCAAGTGGTGGTGGTGGTGATCATGACATGATGGGACTTGGTCCATTACTTCCTACTGAATCTGAAAGGTCACTCATGGAACGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCGAGAATTGAAGATGTAAGGGAGGAAATATTAAGGAAAAGAAGAGCTGGGAAATTACCAGGTGACACAACTTCAGTCTTAAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACAGGACTGCAGCTGAAGCAAATCAATAATTGGTTCATTAACCAAAGGAAAAGAAACTGGCACAGTAATTCTCAATCTGTCACCTCTTTGAAGTCGAAACGCAAGAGAGTGTACTGTAGACCCTCCAATGAGATGCACCAAGAGATATAA 918 0.4259 MQEPSLGMMQGSGGGYGGDGGGENRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQLQMDYGLDNQSSGGGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRVYCRPSNEMHQEI* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0335 305 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Mtr5g0335 305 SMART HOX_1 217 282 IPR001356 GO:0003677
Mtr5g0335 305 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Mtr5g0335 305 Pfam Homeobox KN domain 235 274 IPR008422 GO:0003677|GO:0006355
Mtr5g0335 305 Gene3D - 214 290 - -
Mtr5g0335 305 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Mtr5g0335 305 ProSiteProfiles 'Homeobox' domain profile. 215 278 IPR001356 GO:0003677
Mtr5g0335 305 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g0335 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 292 - -
Mtr5g0335 305 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Mtr5g0335 305 ProSiteProfiles ELK domain profile. 195 215 IPR005539 GO:0003677
Mtr5g0335 305 CDD homeodomain 218 279 IPR001356 GO:0003677
Mtr5g0335 305 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 292 - -
Mtr5g0335 305 SUPERFAMILY Homeodomain-like 217 282 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0335 Mtr-Chr5 3140747 3145173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0335 1 291 Homeobox Transcription Factor Family AT1G62990 78.716 2.32e-170 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mtr5g0335 KNOX2 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0335 - - gmx:100808872 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0335 5 3140747 3145173 Mtr5g0335 5 3140747 3145173 ECH