Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0327 ATGGATTTCTTCATGTCATCATTTAGTGATTACTCAGACACTTCTTCATCAGAAACAGCTTCATCAAACCGTACAAGTTCTTCAGAAGTGATTTTGGCACCTGCAAGACCAAAGAAGAGAGCAGGTAGAAGAGTGTTCAAGGAGACAAGACATCCGGTGTACCGAGGAGTACGACGTAGGAAGAATAACAAGTGGGTTTGTGAGATGAGAGTTCCTAACAATATCGTTAACAAAAATAATAAGTCAAGGATTTGGCTTGGAACATATCCAACTCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAAGGAAAATCAGCTTGTCTTAATTTTGCTGACTCTGCATGGCGGTTGAGGTTGCCGGAGTCGAATGATGCGACGGAGATAAGGAGGGCGGCGATGGAGGCTGCTCAGTTGTTTGCGGTTGAAGACAAGCAATGTTGTGTTACCGTTGAAGATGGAGTGTTTATGGACATGGAAGATTCCAAGAATATGCTAGAAGCACAGGTTCCAGTGGTGTCATCAGAATTTGAAGACATGCATCATTTGCTTCTAAGTATTGCCAATGAGCCTTTACGTTCAGCTCCTCCTTCCCCAACAAATTATGGTAGTTATAACTGGGGTGACATGGAGATTTTTGATACTCAATTAGTTTCACTTTGGAACTTCTCTATTTGA 690 0.4232 MDFFMSSFSDYSDTSSSETASSNRTSSSEVILAPARPKKRAGRRVFKETRHPVYRGVRRRKNNKWVCEMRVPNNIVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDATEIRRAAMEAAQLFAVEDKQCCVTVEDGVFMDMEDSKNMLEAQVPVVSSEFEDMHHLLLSIANEPLRSAPPSPTNYGSYNWGDMEIFDTQLVSLWNFSI* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0327 229 Pfam AP2 domain 52 108 IPR001471 GO:0003700|GO:0006355
Mtr5g0327 229 MobiDBLite consensus disorder prediction 1 30 - -
Mtr5g0327 229 MobiDBLite consensus disorder prediction 1 41 - -
Mtr5g0327 229 ProSiteProfiles AP2/ERF domain profile. 53 116 IPR001471 GO:0003700|GO:0006355
Mtr5g0327 229 SUPERFAMILY DNA-binding domain 53 118 IPR016177 GO:0003677
Mtr5g0327 229 CDD AP2 54 118 IPR001471 GO:0003700|GO:0006355
Mtr5g0327 229 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Mtr5g0327 229 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Mtr5g0327 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Mtr5g0327 229 SMART rav1_2 53 122 IPR001471 GO:0003700|GO:0006355
Mtr5g0327 229 Gene3D AP2/ERF domain 53 117 IPR036955 GO:0003700|GO:0006355
Mtr5g0327 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0327 Mtr-Chr5 3053585 3054545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0327 26 227 AP2-EREBP Transcription Factor Family AT1G12610 47.926 4.86e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0327 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0327 - - mtr:MTR_5g010940 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0327 5 3053585 3054545 Mtr5g0327 5 3053585 3054545 ECH
Mtr4g3672 4 50501461 50502344 Mtr5g0327 5 3053585 3054545 PCT