Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0326 ATGAATATTTTCCTTTCATCTTTTGGCGACTACTCAGATTCTTCTTCTTCTTCAGAAACAAGTTCTTCAGAAGTGATTTTGGCATCTGCAAGACCAAAGAAGAGAGCAGGGAGAAGAGTGTTTAAGGAGACAAGACATCCAGTGTACCGAGGAGTACGAAGAAGGAACAATAACAAGTGGGTTTGTGAGATGAGAGTTCCTAATATTAACGTTAACAAAAACAATAAGTCAAGGATTTGGCTTGGAACATATCCAACTCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAAGGAAAATCAGCTTGTCTTAATTTTGCTGACTCTGCATGGCGGTTGACGTTGCCGGAGTCAAATGATGCGGTGGAGATAAGGAGAGCTGCGATGGAGGCTGCTAAAATGTTTGCAATTGAAGAGAACCATAATCAGAGGAGTGATAGGGATGCTGTGGATATGAATATGGAAAATTCTAAAAAGAATGTGCTAGAAGTACAAGTTCCAGTTCTATCGTCAGAATTTGAAGACATGCATCATAATTTGCTTTTGAGTATTGCTAATGAGCCTTTACGTTCTAATCCTCCTTCCCCTACAAATTATTATGGTAGTAACTATGATGACATGGAGATATTTGACACTCAGATAGTTTCTTTGTGGAACTTCTCAATTTGA 681 0.3921 MNIFLSSFGDYSDSSSSSETSSSEVILASARPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNINVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLTLPESNDAVEIRRAAMEAAKMFAIEENHNQRSDRDAVDMNMENSKKNVLEVQVPVLSSEFEDMHHNLLLSIANEPLRSNPPSPTNYYGSNYDDMEIFDTQIVSLWNFSI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0326 226 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Mtr5g0326 226 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Mtr5g0326 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 226 - -
Mtr5g0326 226 Pfam AP2 domain 47 103 IPR001471 GO:0003700|GO:0006355
Mtr5g0326 226 Gene3D AP2/ERF domain 48 112 IPR036955 GO:0003700|GO:0006355
Mtr5g0326 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 226 IPR045277 GO:0003700
Mtr5g0326 226 SUPERFAMILY DNA-binding domain 48 113 IPR016177 GO:0003677
Mtr5g0326 226 SMART rav1_2 48 117 IPR001471 GO:0003700|GO:0006355
Mtr5g0326 226 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700|GO:0006355
Mtr5g0326 226 MobiDBLite consensus disorder prediction 1 27 - -
Mtr5g0326 226 MobiDBLite consensus disorder prediction 1 29 - -
Mtr5g0326 226 CDD AP2 49 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0326 Mtr-Chr5 3045953 3047020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0326 24 139 AP2-EREBP Transcription Factor Family AT1G12610 71.552 1.88e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0326 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0326 - - mtr:MTR_5g010940 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3797 1 49533617 49534641 Mtr5g0326 5 3045953 3047020 ECH
Mtr5g0326 5 3045953 3047020 Mtr5g0326 5 3045953 3047020 ECH
Mtr4g3673 4 50508766 50509836 Mtr5g0326 5 3045953 3047020 PCT