Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0325 ATGGATTTCTTCATGTCATCTTTTGGTGAGTACTCAGACACTTCTTCTTCAGAAACAAGTTCCTCGGAAGTGATTTTGGCATCAGTTAATAAGCCAAAGAAGAGAGCAGGTAGAAGAGTGTTCAAGGAGACAAGACATCCGGTGTACCGAGGAGTACGACGTAGGAAGAATAACAAGTGGGTTTGTGAGATGAGAGTTCCTAACAATATCGTTAACAAAAATAATAAGTCAAGGATTTGGCTTGGAACATATCCAACTCCTGAAATGGCTGCACGTGCACATGATGTTGCTGCACTTACTCTTAAAGGAAAATCAGCTTGTCTTAATTTTGCTGACTCTGCATGGCGGTTGAGGTTGCCGGAGTCGAATGATGCGACGGAGATAAGGAGGGCGGCGATGGAGGCTGCTCAGTTGTTTGCGGTTGAAGACAAGCAATGTTGTGTTACCGTTGAAGATGGAGTGTTTATGGACATGGAAGATTCCAAGAATATGCTAGAAGCACAGGTTCCAGTGGTGTCATCAGAATTTGAAGACATGCATCATTTGCTTCTAAGTATTGCCAATGAGCCTTTACGTTCAGCTCCTCCTTCCCCAACAAATTATGGTAGTTATAACTGGGGTGACATGGAGATTTTTGATACTCAATTAGTTTCACTTTGGAACTTCTCTATTTGA 675 0.4237 MDFFMSSFGEYSDTSSSETSSSEVILASVNKPKKRAGRRVFKETRHPVYRGVRRRKNNKWVCEMRVPNNIVNKNNKSRIWLGTYPTPEMAARAHDVAALTLKGKSACLNFADSAWRLRLPESNDATEIRRAAMEAAQLFAVEDKQCCVTVEDGVFMDMEDSKNMLEAQVPVVSSEFEDMHHLLLSIANEPLRSAPPSPTNYGSYNWGDMEIFDTQLVSLWNFSI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0325 224 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700|GO:0006355
Mtr5g0325 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 224 - -
Mtr5g0325 224 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Mtr5g0325 224 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Mtr5g0325 224 SMART rav1_2 48 117 IPR001471 GO:0003700|GO:0006355
Mtr5g0325 224 Gene3D AP2/ERF domain 48 112 IPR036955 GO:0003700|GO:0006355
Mtr5g0325 224 SUPERFAMILY DNA-binding domain 48 113 IPR016177 GO:0003677
Mtr5g0325 224 Pfam AP2 domain 47 103 IPR001471 GO:0003700|GO:0006355
Mtr5g0325 224 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 224 IPR045277 GO:0003700
Mtr5g0325 224 CDD AP2 49 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0325 Mtr-Chr5 3036778 3054400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0325 20 222 AP2-EREBP Transcription Factor Family AT1G12610 47.248 1.75e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0325 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0325 - - mtr:MTR_5g010940 424.476