Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0316 ATGTCGACACCGAACCGTTCCTCATCAGACATCATCGATTCAACCCCCTTTCTCACCAATCCTGGCAACGGTTCTTCCTCCGATGACCTCAACAACTCCGGTCGCCGTCGCCGCCAACGCCTCCTCCAAGCCGCACGCTTCCTTCGTCAAGCAAGCGGCCGTCGAACGATGCGGGAACCCTCCGTCGTCGTTCGCGAAGCCGCGGCTGAGCAATTAGAAGAACGACAAAGCGATTGGGCGTATTCGAAGCCGGTTGTGATTCTCGATATCGTTTGGAACTTCGCCTTCGTCATTGTAGCGGGGACCGCTTTGTTTTTGAGCCGGAACGAAGCGCCGGAAATGCCGTTGAGATTGTGGATTGCGGGATATGTGCTTCAATGTGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAGGAGAAGGAGAAGATTTCAACGTTCTTCGTCTTCTAATGCGGTTGCAGGTTCTGATAGGATTGGTAGTGGGAATTTCAGTTCAAGAGAAGGTTCTCGTTCTGCTGTTTCTGGTTCTAGTTATGTTTCATTGGCGCAATTTGATGAAGAGAGTACTAGTGTTGCTAAACATTTGGAATCAGCCAATACCATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAGCTTTAGCCCAAGATTCTCCTCAGCTTTACTGGTTATGTATAGTCTTTCTTGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCCTGTGTCATTGGTATCGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTTCTTTATGCTGTTGCAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTATCAAAATTTAAATTCCGAAAAGTTGAAAGTAATGAGAAACAAACTGATAACAATCAAGGTCCTGTTGGAGGAATAATGACTGAGTGTCGGGCTGATTCACCCATTGAACATGTTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGACGATGGAGTTGAACTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGTATATTAATGCCACATGCCCTCTCTGCAAGTATAACATCTTGAAAAGTAGTAACCTGGGTCAAGAGGAAGTGTAG 1164 0.457 MSTPNRSSSDIIDSTPFLTNPGNGSSSDDLNNSGRRRRQRLLQAARFLRQASGRRTMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVIVAGTALFLSRNEAPEMPLRLWIAGYVLQCVLHMVCVCFEYRRRRRFQRSSSSNAVAGSDRIGSGNFSSREGSRSAVSGSSYVSLAQFDEESTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALAQDSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRKVESNEKQTDNNQGPVGGIMTECRADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLGQEEV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0316 387 SMART ring_2 332 372 IPR001841 -
Mtr5g0316 387 MobiDBLite consensus disorder prediction 1 35 - -
Mtr5g0316 387 CDD RING-H2_RNF111_like 331 375 - -
Mtr5g0316 387 MobiDBLite consensus disorder prediction 1 30 - -
Mtr5g0316 387 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 387 - -
Mtr5g0316 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Mtr5g0316 387 PANTHER TARGET OF ERK KINASE MPK-1 3 387 - -
Mtr5g0316 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 385 IPR013083 -
Mtr5g0316 387 Pfam Ring finger domain 331 373 IPR001841 -
Mtr5g0316 387 SUPERFAMILY RING/U-box 322 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0316 Mtr-Chr5 2934575 2941580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0316 20 380 C3H Transcription Factor Family AT1G68070 49.176 1.19e-119 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0316 - - gmx:100790497 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3683 4 50594040 50601100 Mtr5g0316 5 2934575 2941580 PCT