Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0315 ATGGCGACATTACCGGTGGAGCAAACAGGTGAATCGGCGACGGCGGAGTCGCAGAGATCGATTCCGACGCCGTTTCTGACGAAAACTTATCAACTTGTTGATGATTCTTCCGTTGATGATCTGGTATCATGGAATGAAGATGGAACAAGCTTCATAGTTTGGAAACCTGCTGAATTTGCTAGAGATTTGCTTCCAAAGTATTTCAAACACAATAATTTCTCCAGTTTCGTTCGTCAACTCAATACCTATGGATTTCGGAAAGTTGTACCTGATCGGTGGGAATTTGCTAATGATGGATTCCGGCGAGGCGAGAAAAATCTGCTTCGGGATATACAGCGGAGAAAAATATTGCCGGCAGCAGGAACAGCGATGGCGACGGCTGTAGCTGCAGCTAATACTGTAACGGTAGCTATGGCGGCACCGGTTAGAATGGTGTCTCCAGCAACTTCGGGTGATGAACAGGTGGTTTCGTCGAATTCATCTCCGATTGCAGTGAACAATGGTGCTACGGTGCAGCGTAGCACAAGTTGCACCACTGCACCGGAGTTAGTTGAAGAGAATGAAAGACTGAAAAAAGAGAATATGCAACTGAGTAATGAGTTGAGTCAGTTGAAAGGTCTTTGTAATAATATACTTGCTATGATGAGTAATTATAATTCTGGTTTCAGTAGACAGTTAGAATCTTCTACAAGTGCTGCGACGGCGCGAGGCGTGGTTGTAACAGAAGGGAAAATTTTGGATCTTTTGCCTTTAAGGAATGTTTCTTTAGCTGAGGAAAATGTGGTGGTTAATTTGGGTGGTGCTGCCGGTGGTTTGCCGTGTGAGACGATGAGTTTGATGGAACCTGAGGTTCAAGCATCTCAGGTTCCTAAGCTATTTGGGGTTTCAATTGGGCTTAAACGATGTAGGACCGAGAATGAGGTTGAACCGGAGAGAGAGGAACGGGAACAACATCAACAAATGCAAGTGCAGATGCAAACACAATCCTCGCAGGAGACTGATCGAGGATCAGATGTGAAATCTGAACCACGCGATGGTGACTCGGATGATCAAGAGCGTCGTTGGAAATTGATGAAATAG 1080 0.4528 MATLPVEQTGESATAESQRSIPTPFLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKILPAAGTAMATAVAAANTVTVAMAAPVRMVSPATSGDEQVVSSNSSPIAVNNGATVQRSTSCTTAPELVEENERLKKENMQLSNELSQLKGLCNNILAMMSNYNSGFSRQLESSTSAATARGVVVTEGKILDLLPLRNVSLAEENVVVNLGGAAGGLPCETMSLMEPEVQASQVPKLFGVSIGLKRCRTENEVEPEREEREQHQQMQVQMQTQSSQETDRGSDVKSEPRDGDSDDQERRWKLMK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0315 359 Gene3D - 17 115 IPR036388 -
Mtr5g0315 359 MobiDBLite consensus disorder prediction 304 359 - -
Mtr5g0315 359 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 9 343 - -
Mtr5g0315 359 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0315 359 MobiDBLite consensus disorder prediction 304 319 - -
Mtr5g0315 359 MobiDBLite consensus disorder prediction 335 359 - -
Mtr5g0315 359 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0315 359 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Mtr5g0315 359 MobiDBLite consensus disorder prediction 320 334 - -
Mtr5g0315 359 Coils Coil 180 207 - -
Mtr5g0315 359 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0315 359 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0315 359 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0315 359 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mtr5g0315 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 343 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0315 Mtr-Chr5 2925790 2927956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0315 16 343 HSF AT4G11660 51.327 2.58e-92 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mtr5g0315 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0315 K09419 - gmx:100791020 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0315 5 2925790 2927956 Mtr5g0315 5 2925790 2927956 ECH