Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0304 ATGAGCATTATGACAAAGAAAGGTGTTTGGAAAAACACCGAGGATGAAATCCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAGTGGGCTCGTATCTCGTCCCTACTCGTTTGCAAATCTGCAAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAGACTGAGTGGACTCGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGGTTATGCCTACTCAGCGGAGAACCATTAGTGTGGGTCGTACTCCTTCGCAGTGTCTTGAACGGTATGAGAAACTCCTTGACGCCGCTTGTGTTAAGGACGGTAACTATGAACCTGGTGATGACCCTAGGAAATTGCGTCCAGGGGGGATTGATCCGAATCCTGAATCAAAGCCTCCGCGACCTGATCCTGTTGATATGGACGAGGATGAGAAGGAGATGCTTTCCGAAGCATGTGCTCGGTTGGCTAACACGAAAGGTAAAAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCGGGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAATTGAAGGCTGCTGGGATTGATATAAGGCAGCGGAGGAGGAAAAGGAGAGGGATTGATTATAATGCAGAAATTCCGTTTGAGAAGAGGCCTCCTCCGGGTTATTTTGATGTTGCTGATGAGGATAGGGAGGTGGAGCAGCGTTTCCCTACTACTATAGAAGAACTTGAGGGGAAAAGAAGGATTGATGTTGAGGCTCAGTTGAGAAAGCAAGATGTTGCAAGGAATAAAATCGCAGAGAGGCAAGATGCCCCGGCGGCTATTCTGCATGCCAGGAAGCTGAATGACCCAGAAACGGTTAGAAAGAGATCAAAACTGATGCTTCCACCACCTCAGATTTCCGATCAAGAATTGGATGAAATTGCCAAGTTTGGTTATGCCAGTGACCTTGTGGGCAGCGATGAACTCACCAAAGGCAGCAGTGCTACTCGTGCTCTTCTCCCTAATTATCCACAGACACCCAACCAAGCCATGACTCCTTTAAGAACTCCTCAGAGAACACCAGCTGGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGCTGAGGGAGTCTCAGACATTACTGTTAGGAGGAGAGAACCCGGAGTTGCATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACATTCCAAGCCCACTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCCAGAAGTGGTATGACGCCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCGAAGGGAACTCCTCTCAGGGATGAGCTACATATCAATGAAGATATGGAGATGCGTGATAGTGCTAAACTCGAGCTACGGAGACAAGCTGATATGAAAAAAAGTCTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAATACAAGAAGATGCTGAAGAGCCCGAGGAGAAGATTGAAGAGGATATGTCTGATAGAATGGCTAGAGAAAAGGCAGAAGAAGAGGCACGGCAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTACGCCTCCTCCAGCATCTCTGGAGCTTATTAGGAACTCCTTGATAAGAGCTGACGGAGACAAAAGTTCATTTGTACCACCAACCCCTATTGAGCAAGCCGACGAGATGATAAGAAAGGAGCTTCAAGCCTTACTGGAGCATGACAATGCTAAGTATCCGCTTGAGGAGATAGCAAATAAGGAGAGAGAGAAAGGATCCAAATGA 1824 0.4644 MSIMTKKGVWKNTEDEILKAAVMKYGKNQWARISSLLVCKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKVMPTQRRTISVGRTPSQCLERYEKLLDAACVKDGNYEPGDDPRKLRPGGIDPNPESKPPRPDPVDMDEDEKEMLSEACARLANTKGKKAKRKAREKQLEEAGRLASLQKKRELKAAGIDIRQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDREVEQRFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHARKLNDPETVRKRSKLMLPPPQISDQELDEIAKFGYASDLVGSDELTKGSSATRALLPNYPQTPNQAMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTLLLGGENPELHPSDFSGVTPKKKEIHIPSPLLTPSATPGSAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEDMEMRDSAKLELRRQADMKKSLRSGLSSLPQPKNEYQIVMQPIQEDAEEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRELPTPPPASLELIRNSLIRADGDKSSFVPPTPIEQADEMIRKELQALLEHDNAKYPLEEIANKEREKGSK* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0304 607 MobiDBLite consensus disorder prediction 493 523 - -
Mtr5g0304 607 SUPERFAMILY Homeodomain-like 33 104 IPR009057 -
Mtr5g0304 607 MobiDBLite consensus disorder prediction 108 178 - -
Mtr5g0304 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 105 IPR017930 -
Mtr5g0304 607 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Mtr5g0304 607 Pfam pre-mRNA splicing factor component 406 601 IPR021786 -
Mtr5g0304 607 ProSiteProfiles Myb-like domain profile. 54 101 IPR001005 -
Mtr5g0304 607 MobiDBLite consensus disorder prediction 334 355 - -
Mtr5g0304 607 Pfam Myb-like DNA-binding domain 10 70 - -
Mtr5g0304 607 MobiDBLite consensus disorder prediction 108 125 - -
Mtr5g0304 607 Gene3D - 5 59 - -
Mtr5g0304 607 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Mtr5g0304 607 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 598 - -
Mtr5g0304 607 SMART sant 58 103 IPR001005 -
Mtr5g0304 607 SMART sant 6 55 IPR001005 -
Mtr5g0304 607 CDD SANT_CDC5_II 55 104 - -
Mtr5g0304 607 MobiDBLite consensus disorder prediction 507 523 - -
Mtr5g0304 607 CDD SANT 10 53 IPR001005 -
Mtr5g0304 607 MobiDBLite consensus disorder prediction 334 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0304 Mtr-Chr5 2827238 2831112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0304 1 607 MYB-Related Transcription Factor Family AT1G09770 81.178 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g0304 Myb_Cef 5e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0304 K12860 - gmx:100801352 1016.14