Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0301 ATGGCGAAGCTATTATCCTTAGCTTGCTTTCGAAACGAAGGATGGCACAATCTTTCAGCTAGATCTCACTACCCTTCCATGCCTTCTTTTCCCAAAAGCGAGCCAGGTACCTCCACCGTGGAGGAGCCGTCCAAAGTCACCGCACTTTTCTCGGTCCATGGTATGACTTGCTCCGCTTGCGCTGGATCTGTGGAGAAATCCATCAAACGGCTACATGGAATTCATGAAGCTGTTGTTGACGTACTTCATAACCGTGCCCGCGTCATCTTTCACCCCTCTTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAGGATGCTGGATTTGACGCCGCGTTACTAACAGATGTAACGAATGAGAACACTATTCAAGTATGCCGTATACAAATAAAAGGAATGACATGCACGTCGTGTTCCACCGCGGTTGAATCAGCCCTAAAAGCCCTCTCTGGAGTTGTTGGAGCCCAAGTAGCTTTAGCAACAGAAGAAGCTCAAGTTCATTACAATCCAAACATCATTACTCATAGCCAAATCTTGGAAGCTGTAGATGAAGCTGGATTTGAAGCAACACTCATTAGTTCAAGTGAAGACTTAAGCAAAATCGATCTCCACGTGGAAGGTGATCTCACCAATAATGACATGATCAAACTCGTCGAAGATTCTCTCCGATCACTCCCTGGAGTTTTAGAATTACACACCAATCTCGAGTTCAACAAAATTTCGCTTTCTTATAAAGCAGACATAACAGGGCCAAGGGATTTCATTAATGTGATTGTAGAAACTAGTAATGGAAATTTGAAGGCGAAAATATTTCCTAGTGAAGGTGGAAGAAGAGATGCTCATAGAAAAAAGGAAATTAAAAGCTATTACAAATCTTTTTTATGGAGTTTGGTGTTTACCGTTCCAGTTTTTCTAACTTCCATGGTGTTTATGTATATACCTGGAATAAAAAATTTATTGGATTCGAAAATCGTGAAGATGCTTACTATTGGAGAGGTTATTCGTTGGGTGCTTGCAACACCAGTGCAGTTCATTTTCGGGTGGCGATTTTATACTGGTGCTTATAAATCATTGCGCCGTGGTTCTGCTAATATGGATGTGCTGATAGCACTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATTCTGTTTTGAGAGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTCTTTGAGACTAGTGCGATGCTTATTTCGTTTATTCTATTAGGAAAGTATCTTGAGGTTTTAGCTAAGGGGAAAACATCAAATGCAATTGCAAAGTTAATGAATTTGACACCTGATACTGCTATATTGTTGAGTTTGGATGGTGAAGGGAATGTTGTTGGGGAGGAAGAAATTGATAGTAGGTTGGTTCAGAAGAATGATGTGATTAAGATTATTCCGGGTGCAAAAGTTGCTTCTGATGGGCTCGTTGTTTGGGGGCAGAGTCATGTGAATGAGAGTATGATAACAGGTGAGGCACGTCCCGTGTCTAAGAGGAAAGATGATACTGTTATTGGTGGAACTTTGAATGAAAATGGTGTCTTGCATGTAAAGGCAACAAAGGTTGGATCAGAAAGTGCTCTTTCACAGATTGTACGACTTGTTGAGTCTGCTCAGATGGCTAAAGCTCCTGTCCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTTTGGTGATCTTGATCTCATTTTCAACTTGGCTTGCCTGGTTCTTAGCTGGAAAATATAACGCTTACCCGAAATCTTGGATTCCGTCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCTGTCATGGTTATTGCTTGCCCTTGTGCTTTGGGTTTAGCCACACCTACCGCTGTTATGGTTGGAACTGGAGTTGGTGCATCTCAGGGTGTATTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACGGGTACTCTCACTATTGGGAAGCCTGTGATAGTAAATACAAAACTATTGACAAAAATGGTACTTCGAGAATTCTATGAAATTGTTGCTGCAGCTGAGGTGAACAGCGAACATCCACTAGCTAAGGCCGTTGTTGAGTATGCTAAAAAATTTAAAGATGAAGAGAACCCTTCTTGGCCAGAAGCACGAGATTTTATTTCCATTACTGGACATGGAGTAAAGGCCACCGTTCGTAACAAGGAAATAATGGTCGGTAATAAGGGCTTGATGGTTGACCATAATATTGCAATTCCTGCTATTGCTGAAGATCTACTTGCTGAAGCCGAAAACATGGCTCAAACAGGAATTTTAGTATCTATAAATGGGGAAGTAGCTGGGGTTTTAGCAATATCTGATCCGCTGAAACCAGGTGCTCAAGAAGTGATTTCCATTCTCAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGAGACAACTGGGGAACTGCTAATTCCATTGCTAGGGAAGTTGGAATTGAAGATGTTATTGCTGAAGCCAAACCGGATCAGAAAGCAGACAAAGTAAAAAATTTGCAGGCTTCTGGATACACGGTGGCTATGGTGGGGGACGGTATCAATGATTCGCCTGCACTTGTAGCAGCAGACGTGGGAATGGCAATAGGTGCTGGCACAGACATTGCTATTGAGGCAGCTGATATTGTACTAATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGATCTTTCAAGAAAAACTTTATTTCGTATACGCCTCAATTATGTTTGGGCTTTGGGTTATAATTTGCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGGTTGCCGCCTTGGATCGCTGGAGCTGCTATGGCTGCCTCTTCTGTCAGTGTAGTTTGTTGTTCTCTGCTGTTGAAATATTACAAGAGACCCAAGAAGCTAAACAGCCTTGACATAGGGGCCATATTGATCGAGACATCAAGCGATCCTTTGATCATACACGACGATTGA 2991 0.4213 MAKLLSLACFRNEGWHNLSARSHYPSMPSFPKSEPGTSTVEEPSKVTALFSVHGMTCSACAGSVEKSIKRLHGIHEAVVDVLHNRARVIFHPSFVNEEAICEAIEDAGFDAALLTDVTNENTIQVCRIQIKGMTCTSCSTAVESALKALSGVVGAQVALATEEAQVHYNPNIITHSQILEAVDEAGFEATLISSSEDLSKIDLHVEGDLTNNDMIKLVEDSLRSLPGVLELHTNLEFNKISLSYKADITGPRDFINVIVETSNGNLKAKIFPSEGGRRDAHRKKEIKSYYKSFLWSLVFTVPVFLTSMVFMYIPGIKNLLDSKIVKMLTIGEVIRWVLATPVQFIFGWRFYTGAYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLSLDGEGNVVGEEEIDSRLVQKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKDDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFSTWLAWFLAGKYNAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYEIVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFISITGHGVKATVRNKEIMVGNKGLMVDHNIAIPAIAEDLLAEAENMAQTGILVSINGEVAGVLAISDPLKPGAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIEDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTLFRIRLNYVWALGYNLLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNSLDIGAILIETSSDPLIIHDD* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0301 996 Gene3D - 619 913 IPR023214 -
Mtr5g0301 996 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 405 940 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Mtr5g0301 996 Pfam Heavy-metal-associated domain 128 188 IPR006121 GO:0046872
Mtr5g0301 996 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Mtr5g0301 996 Gene3D - 420 542 - -
Mtr5g0301 996 Gene3D - 44 114 - -
Mtr5g0301 996 Gene3D - 737 787 IPR023299 GO:0000166
Mtr5g0301 996 Gene3D - 659 736 IPR023299 GO:0000166
Mtr5g0301 996 SFLD p-type atpase 634 908 IPR044492 -
Mtr5g0301 996 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Mtr5g0301 996 ProSitePatterns Heavy-metal-associated domain. 52 81 IPR017969 GO:0046872
Mtr5g0301 996 SUPERFAMILY Calcium ATPase, transmembrane domain M 397 645 IPR023298 -
Mtr5g0301 996 Pfam E1-E2 ATPase 451 630 - -
Mtr5g0301 996 PANTHER ATP7, ISOFORM B 5 976 - -
Mtr5g0301 996 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 5 976 - -
Mtr5g0301 996 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 365 965 IPR027256 GO:0006812|GO:0016021|GO:0019829
Mtr5g0301 996 SFLD C1.7: P-type atpase like 634 908 - -
Mtr5g0301 996 SUPERFAMILY HAD-like 651 962 IPR036412 -
Mtr5g0301 996 CDD HMA 128 190 IPR006121 GO:0046872
Mtr5g0301 996 Pfam haloacid dehalogenase-like hydrolase 648 870 - -
Mtr5g0301 996 SUPERFAMILY Calcium ATPase, transduction domain A 452 538 IPR008250 -
Mtr5g0301 996 SUPERFAMILY HMA, heavy metal-associated domain 44 114 IPR036163 GO:0046872
Mtr5g0301 996 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Mtr5g0301 996 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Mtr5g0301 996 PRINTS Copper-transporting ATPase 1 signature 102 122 - -
Mtr5g0301 996 PRINTS Copper-transporting ATPase 1 signature 148 169 - -
Mtr5g0301 996 SUPERFAMILY HMA, heavy metal-associated domain 121 194 IPR036163 GO:0046872
Mtr5g0301 996 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Mtr5g0301 996 ProSitePatterns E1-E2 ATPases phosphorylation site. 654 660 IPR018303 -
Mtr5g0301 996 Gene3D - 124 197 - -
Mtr5g0301 996 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Mtr5g0301 996 PRINTS P-type cation-transporting ATPase superfamily signature 652 666 - -
Mtr5g0301 996 PRINTS P-type cation-transporting ATPase superfamily signature 781 792 - -
Mtr5g0301 996 PRINTS P-type cation-transporting ATPase superfamily signature 803 813 - -
Mtr5g0301 996 PRINTS P-type cation-transporting ATPase superfamily signature 856 875 - -
Mtr5g0301 996 PRINTS P-type cation-transporting ATPase superfamily signature 879 891 - -
Mtr5g0301 996 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Mtr5g0301 996 CDD P-type_ATPase_Cu-like 291 966 - -
Mtr5g0301 996 CDD HMA 50 112 IPR006121 GO:0046872
Mtr5g0301 996 TIGRFAM TIGR00003: copper ion binding protein 50 111 IPR006122 GO:0005507
Mtr5g0301 996 TIGRFAM TIGR00003: copper ion binding protein 128 189 IPR006122 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0301 Mtr-Chr5 2787925 2806480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0301 3 985 Primary Pumps ATPases AT1G63440 73.992 0.0 1493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0301 K17686 - gmx:100816893 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0301 5 2787925 2806480 Mtr5g0301 5 2787925 2806480 ECH