Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0296 ATGGATGAGAGAGAAGCTATGTCATTTTCTGATGGGTCTGGTTCATATTACATGCATAAAGAAAGAGTGTTTCAACAACCACCTCCTGGGTTTAGAGCTTTGTCTAATCCTCATGGTGGTTCTGATGGTTCTACATTTTCAGTAGAGCATGAGCATGGTAGTTTTAGTCATGGTGCTGTAGTGCCTTATTCAGGGGAGCAGTCTGTGAAAAAGAAAAGAGGGAGGCCTAGGAAGTATGGTCCTGATGTACCTGTTTCTTTGAGACTTTCTCCTATGTCTGCCACTGCTAATTCTACTCCTGATTCGGAGAAACGGCCGAGAGGACGGCCACCGGGAAGTGGAAGGAAGCAACAGCTAGCTGCTCTAGGTGAATGGATGAACAGCTCCGCTGGACAGGCTTTTTCACCTCATGTTATCACCATTGGACCTCAAGAGGACATTGTAGAAAAGTTATTGTTATTTTCACAACATAGACCACGCGCTTTATGCGTCTTGTCGGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACCAGTGTCAGTGTTACATACGAGGGTCGATTCCAAATATTATGCTTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGCATGGATGGTCATGTTATCGGTGGTGGGGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTAGTTTGCAGCTTTGTGTACGGTGGTTCTAAGCCAAAGACAACAAAACAAGAAACTGCTGTAAAAGACGATGACGATTCTGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCAGGAAGTGAGCCACCTAATCAAAACTATACAGCTTCTGGAACAGGCACAATGTGGCATGGATCAAGGACAGTAGACGTGAAAAGTACACAACCACACACTGGTATTGATTTGATGAACGGGTGA 966 0.4555 MDEREAMSFSDGSGSYYMHKERVFQQPPPGFRALSNPHGGSDGSTFSVEHEHGSFSHGAVVPYSGEQSVKKKRGRPRKYGPDVPVSLRLSPMSATANSTPDSEKRPRGRPPGSGRKQQLAALGEWMNSSAGQAFSPHVITIGPQEDIVEKLLLFSQHRPRALCVLSGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEDGGPHNRTGGISVSLSSMDGHVIGGGVARLIAASPVQVVVCSFVYGGSKPKTTKQETAVKDDDDSEPQSSDKLASPGSEPPNQNYTASGTGTMWHGSRTVDVKSTQPHTGIDLMNG* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0296 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 321 IPR039605 GO:0003680
Mtr5g0296 321 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 14 321 - -
Mtr5g0296 321 MobiDBLite consensus disorder prediction 259 274 - -
Mtr5g0296 321 Gene3D - 136 266 - -
Mtr5g0296 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 250 - -
Mtr5g0296 321 CDD DUF296 136 248 IPR005175 -
Mtr5g0296 321 ProSiteProfiles PPC domain profile profile. 131 270 IPR005175 -
Mtr5g0296 321 MobiDBLite consensus disorder prediction 275 321 - -
Mtr5g0296 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Mtr5g0296 321 MobiDBLite consensus disorder prediction 1 118 - -
Mtr5g0296 321 MobiDBLite consensus disorder prediction 256 321 - -
Mtr5g0296 321 PRINTS AT-hook-like domain signature 70 80 IPR017956 GO:0003677
Mtr5g0296 321 PRINTS AT-hook-like domain signature 102 113 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0296 Mtr-Chr5 2759800 2763821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0296 1 321 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.895 2.34e-93 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0296 - - cam:101497147 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0296 5 2759800 2763821 Mtr5g0296 5 2759800 2763821 ECH
Mtr5g0296 5 2759800 2763821 Mtr8g3450 8 45026349 45030359 PCT