Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0293 ATGGGAAAAGGAAACCCTAGGTCTGTAGAAAAACGTGTATTAGGTCAAAATCTTCCAATTTCATCTCCAACTATACCTTCAGCACCTGTTTATTATCCAACCGAAGATGAATTCAAAGATCCTTTAGAATTTATTCATAAGATTAGACCTGAAGCTGAACCCTATGGTATTTGTAGAATTGTTCCACCGAATAATTGGAAACCTCCTTTTGCATTGGATCTAGATTCTTTTACTTTTCCGACGAAAACACAGGCGATTCATAAGCTTCAGGTTCGTCCTGCTGCGTGTGATTCGAAGACGTTTGAGTTGGAGTATGGTAGGTTTTTGAGGGATTATTGTGGGAAGAAGGTTAAGAAGAGGGTGGTTTTTGAAGGGGAGGATTTGGATTTGTGTAAGGTGTTTAATGGCGTTAAGAGGTTTGGTGGTTATGATAAGGTTGTTGATGGGAAGAAATGGGGGGAGGTTGCAAGGTTTGTGAGGTGTAATGGGAAGATTTCCGATTGTGCTAAGCATGTTTTGTGTCAGTTGTATAGAGAGCATCTTTATGATTATGAGGTTTTTTGTAATAAGGTTAGTAAAGGTACGAGCACGAGTGGGAGTTGTAAGAGTAAGAGTGATCAAGGGGTGGAGAGTTCGGTGTCTAAGAAGCATCACGGGGTTGTTGATGATATGAAAATTAAGGATTTGAAAGTGAAGGATCGGAAAGTGAAAGATGAAAGCCGTGATCAGATTTGCGAGCAATGTAAAAGTGGGTTGCATGGGGAGGTGATGCTTTTGTGTGATAGGTGTGATAAAGGGTGGCATATTTATTGTCTTTCACCGCCGTTGAAGCAAATTCCGTTGGGAAACTGGTATTGTTTCAATTGTCTGAGTTCGGATAGGGAGAGCTTTGGTTTTGTGCCGGGGAAGCAATATTCGCTGGAAACTTTTAGACGCATTGCAGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCCGTTTCAAGGGTGCAAATAGAGAAGAAATTCTGGGAGATTGTGGAGGGGTCGGTCGGTGAGGTTGAGGTTATGTATGGAAATGATTTGGATACATCTATCTATGGGAGTGGTTTTCCAAATGAAACCAATCAGAAACAGAAACCACAATCTATTGATGATAAGTTATGGCAAGAATACTCAACTAACCCATGGAATCTGAATAACTTGCCCAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATTACTGGTGTTATGGTACCCTGGCTGTATATTGGAATGCTATTCTCATCCTTCTGTTGGCATTTCGAGGATCACTGCTTTTATTCAATGAATTATCTACACTGGGGTGAGCCAAAATGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGCAGCCTTCCTGACCTTTTCGATGCACAGCCTGATCTGCTTTTTCAGCTTGTTACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCACACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGAGCTTACCATGGTGGTTTCAATCTTGGCCTTAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCACACGGTACATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTATTGTCTCACGAGGAGCTTCTTTGTGCAGTAGCCCAGTATGGTGATGTTGATAGCAGAGGGTCCTCTTATTTGAAAATGGAATTGCTGAAAATATCAGATAGAGAAAAATCTTGGAGGGAGAAACTTTGGAGAAGTGGTATCGTTAAATCTTCTCGTTTAGCTCCTCGGAAATGTCCCCAATATGTAGGAACTGAAGATGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGCTAAACTTCGTCTTCTCTACCGTCATTCTCTTGGTGAATTGTATGACTTGGCATTTTCTATTGACAAATATACTTCTGAAGAAAAAGCTGAGAGTAGAAATGTAAAAAGGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAATGGTAGCTCCATTACTTTCACCCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTATTACCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCTGTTCGGGATATGGTAAAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTGACAAAAATTGAGTTGTGGTTGAGTCATCGGGACTCAAGTTTAAAGAAAGTTAATTTAGAATACGTTGAAGAGTTTCTGAGATTTAACCCTGTACCATGCAATGAGCCCCATTATCATAAACTGAAGGAATATGCTGAAGAAGCAAGATCGTTACTTCAGGAGATTGAGACTGCTTTGTCAATGTGCTCCAACATATCTGAGTTGGAACTTCTATACTCTAGAGCTCGTGGCTTACCCATCTACGTGAAAGAGACTAAAAAATTAAAAGGGAAAATTTCATCAACCAAGACATGGATGGATAGTGTCAGAAATTGCATCTCAGCTAGAGATCCTGCTGAATTAGACGTTGATGTTCTCTACAAGTTAAAATCAGAGATTGCAGATCTTCAAGTTCAACTCCCAGAGATAGATGCCCTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCCCAATGTCGTTGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTTCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCACAGTTGAGGCTACTAAGGAATTACCATTCAGATGCTGTGTTATGGGTTTCTCACTTTAATGATGTTTTAGGGAGAGTTCACAGACAGGAAGATCAGCATAATCCAGTTGATGAATTGAAGAGCATTCTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGACGAGTTGCCTATAGTTAAGATTGAGCTGAAGAAGGCTAGTTGCCGACAGAAAGCTTTGAAGGCACATGATTCTAAGATGCCCCTCGAATCCATTCAGCAACTGCTAAAGGAGGCCGCCATGCTAGAAATTGAGGGAGAGAAACAATTCATCAGTCTGTCTTGTGTGCTTGGTGTCGCCATGCGTTGGGAGGAAAGGGCTGGAGCGATTCTTTCAGCTGAGGCTTCTATTTCTGACTTTGAGGACATGATAAGAGCTTCAGAAAATATATTTGTAATTCTTGCTTCACTTGATGATGTTAACAAAGCGTTATTAGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGCCTCTTCTAATTGTGTGTCAAACTCTGTGCGGAAAGTTGAGGACTTGCAGTTGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAAGGACACTTGAATTAGTTTTGAATGACTGCAAAAAATGGGAGTGTGAAGCACGTTCTTTACTTGATGATGGGCGGTGCTTATTTGAATTGGATACCACTGTTCATGGGATAAGCAGTGGTTTATTGTTTAAAGTGGAAGATTTGATTGCAAGAATCCAGTCCGCCATAACATCTGGTGTATCTCTTGGTTTTGACTTCAATGACATTTCAAAACTTCAAGCATCTTGTTCTACACTGGAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTGTTTAGAGGATGTTTTGGAAGTTGTGAAAGGCCTATCTCATTCCTCTGTTTCTGGTGCTCTATTGAAAGTACTGGTTGATGGGGTTGAATGGCTTAGGAGAGCGTTAGAGGGGATTTCTAGACCTTGCAGTTCTAGAAGATTTAAACTGACTGATATTGAAGATATTCTTACTGATTATCAGGCACGCTTTTGTGCTACTAAAATGACCTTTACGGAAGTAAATTGTCAACTTGAGGAAGCCATTGGAAAACATAGGTCGTGGCAAGAGCAAGTGCGGCAATTTTTTAACCTAAGTTCTAGGGATCGAACTTGGTCATCATTATTGCAGCTCAAGGAGCGTGGAGACACCATTGCCTTTAGTTGCTCAGAACTTGAATTAATATTATCTGAAGTTGAAAAGGTGGAAAATTGGATGAAAAAATGCATGGATAATATTGGAGCTTTATTCCAAAAAGAAAATTCGCTGCTTCATGCACTGCAGAAGGTAAAACAGAATCTAGATAGATCACTGTACATATACGGAAAGTTGCAAAATCAGAAGGAACCGAACCTATGTAACTGCTGCTTTGTTGACTCTGATGACCAGAAATTTCTTACTTGTTCTACTTGTATGGACTGCTATCACTTGCGGTGCATTGGACTAACATCAAAAGACGCTGGCCTCAGAAATTATAAGTGCTCTTACTGTGAAATTTTGAAGGCGAAATCTCAATATTCAAATGGAAGTTCCCTCCTGAGGTTTGAGAAGCATATTGAATTGAACATTCTTGTCAAACTTCTTTCTGATGCTGAACATTTCTGTCTGTGGATTGACGAAAAATATCTTCTGAACCAACTTATTGAGAAGGCCTTTGCATGCAAATCTGGATTGAGAGAAATAGTGAACCTTTCTTCAGCTTATGTCAACGAAGATATTACCATCATCTCTGAAAAATTGACCATTGCTATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAAGGTGATAAATGTGACCTTGAGCTGGCATTAGCAAAATACTTGTGGAAAATTCAAGTCAATATATTATTAAGTGGTGTACAAAAGCCCAGTATTGAACAGATTCAGAAACATCTGAAAGAGGGTATGTCTATGGAAATATCACCCAAAGATCACTACATGCTGAAACTTACAAATATGAATTGCTTGGTCATGCACTGGGTAGAAATAGCCAAAAAGGCATCAAATGATTCAGGAGCACATAGCCTAGATAAAGTATATGAACTTTTAGCGGAAGGTGAAAACTTGCCTGTTGATGTAAATGAGGAACTCAGGATGTTAAGAGCTCGATGCATGCTTTACTGCATTTGTCGAACGCCCTTTGATCCCGGAAGGATGATTGCGTGTTATCAATGTAGTGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACGCAAGATATGTACATTTGCCCTGCGTGTATCCCGTGTACAACATTGCCTACTAACCATGACAGATTAACTAGTGGGAAACTTGAGGAGCCTAAAACCCCTTCTCCCAGGCATACAAACCCTAGAAAGAAACAGAAGAGGGATGTGCCGAGTCACACTTGCATCATGTTTGCATCTAGGAATGAAGATGGTAGTAATTTTAGGTATCCCAATGGGATAGAATGTCTAAGGTGGAGAAATCGAAAGCCGTTTAGAAGAGCAACTAGGAGACGTGTTGAACTGCAAAGTCTTTCTCCATTTCTATATGCATAA 5511 0.4032 MGKGNPRSVEKRVLGQNLPISSPTIPSAPVYYPTEDEFKDPLEFIHKIRPEAEPYGICRIVPPNNWKPPFALDLDSFTFPTKTQAIHKLQVRPAACDSKTFELEYGRFLRDYCGKKVKKRVVFEGEDLDLCKVFNGVKRFGGYDKVVDGKKWGEVARFVRCNGKISDCAKHVLCQLYREHLYDYEVFCNKVSKGTSTSGSCKSKSDQGVESSVSKKHHGVVDDMKIKDLKVKDRKVKDESRDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRESFGFVPGKQYSLETFRRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIYGSGFPNETNQKQKPQSIDDKLWQEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSTLQEPGNFVITFPRAYHGGFNLGLNCAEAVNFAPADWLPHGTFGADLYKRYHKTAVLSHEELLCAVAQYGDVDSRGSSYLKMELLKISDREKSWREKLWRSGIVKSSRLAPRKCPQYVGTEDDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTAKLRLLYRHSLGELYDLAFSIDKYTSEEKAESRNVKRQSSCLSALTKKVNGSSITFTQLATEWLLQSSTILQNVFVTDASITALRKAEQFLWAGSEMDSVRDMVKSLTEAQKWAEGIKDCVTKIELWLSHRDSSLKKVNLEYVEEFLRFNPVPCNEPHYHKLKEYAEEARSLLQEIETALSMCSNISELELLYSRARGLPIYVKETKKLKGKISSTKTWMDSVRNCISARDPAELDVDVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQCRCMLEGPMNLKNVGLLLKEWDSFTVDVPQLRLLRNYHSDAVLWVSHFNDVLGRVHRQEDQHNPVDELKSILEEGLSLKIQVDELPIVKIELKKASCRQKALKAHDSKMPLESIQQLLKEAAMLEIEGEKQFISLSCVLGVAMRWEERAGAILSAEASISDFEDMIRASENIFVILASLDDVNKALLEANSWLRNSKPYLASSNCVSNSVRKVEDLQLLVSQSKHLKVSLEERRTLELVLNDCKKWECEARSLLDDGRCLFELDTTVHGISSGLLFKVEDLIARIQSAITSGVSLGFDFNDISKLQASCSTLEWCKRALCFCNHSPCLEDVLEVVKGLSHSSVSGALLKVLVDGVEWLRRALEGISRPCSSRRFKLTDIEDILTDYQARFCATKMTFTEVNCQLEEAIGKHRSWQEQVRQFFNLSSRDRTWSSLLQLKERGDTIAFSCSELELILSEVEKVENWMKKCMDNIGALFQKENSLLHALQKVKQNLDRSLYIYGKLQNQKEPNLCNCCFVDSDDQKFLTCSTCMDCYHLRCIGLTSKDAGLRNYKCSYCEILKAKSQYSNGSSLLRFEKHIELNILVKLLSDAEHFCLWIDEKYLLNQLIEKAFACKSGLREIVNLSSAYVNEDITIISEKLTIAIKASKVAGVYDQGDKCDLELALAKYLWKIQVNILLSGVQKPSIEQIQKHLKEGMSMEISPKDHYMLKLTNMNCLVMHWVEIAKKASNDSGAHSLDKVYELLAEGENLPVDVNEELRMLRARCMLYCICRTPFDPGRMIACYQCSEWYHFDCMKLSCTQDMYICPACIPCTTLPTNHDRLTSGKLEEPKTPSPRHTNPRKKQKRDVPSHTCIMFASRNEDGSNFRYPNGIECLRWRNRKPFRRATRRRVELQSLSPFLYA* 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0293 1836 CDD ARID 97 185 - -
Mtr5g0293 1836 Pfam ARID/BRIGHT DNA binding domain 109 185 IPR001606 GO:0003677
Mtr5g0293 1836 MobiDBLite consensus disorder prediction 194 208 - -
Mtr5g0293 1836 Pfam JmjC domain, hydroxylase 417 533 IPR003347 -
Mtr5g0293 1836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1433 1499 IPR013083 -
Mtr5g0293 1836 Coils Coil 821 844 - -
Mtr5g0293 1836 SMART PHD_3 244 290 IPR001965 -
Mtr5g0293 1836 SMART PHD_3 1702 1744 IPR001965 -
Mtr5g0293 1836 SMART PHD_3 1446 1492 IPR001965 -
Mtr5g0293 1836 Gene3D Cupin 14 120 - -
Mtr5g0293 1836 ProSiteProfiles JmjC domain profile. 384 550 IPR003347 -
Mtr5g0293 1836 ProSiteProfiles Zinc finger PHD-type profile. 242 292 IPR019787 -
Mtr5g0293 1836 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 891 - -
Mtr5g0293 1836 SMART JmjN_1 27 68 IPR003349 -
Mtr5g0293 1836 ProSitePatterns Zinc finger PHD-type signature. 245 289 IPR019786 -
Mtr5g0293 1836 SMART cupin_9 384 550 IPR003347 -
Mtr5g0293 1836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1688 1745 IPR013083 -
Mtr5g0293 1836 SUPERFAMILY ARID-like 78 193 IPR036431 GO:0003677
Mtr5g0293 1836 MobiDBLite consensus disorder prediction 1757 1783 - -
Mtr5g0293 1836 Pfam C5HC2 zinc finger 627 678 IPR004198 -
Mtr5g0293 1836 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Mtr5g0293 1836 SMART bright_3 96 190 IPR001606 GO:0003677
Mtr5g0293 1836 Gene3D Cupin 178 556 - -
Mtr5g0293 1836 Pfam jmjN domain 29 62 IPR003349 -
Mtr5g0293 1836 SUPERFAMILY FYVE/PHD zinc finger 1443 1493 IPR011011 -
Mtr5g0293 1836 MobiDBLite consensus disorder prediction 194 217 - -
Mtr5g0293 1836 ProSitePatterns Zinc finger PHD-type signature. 1703 1743 IPR019786 -
Mtr5g0293 1836 SUPERFAMILY Clavaminate synthase-like 338 569 - -
Mtr5g0293 1836 SUPERFAMILY FYVE/PHD zinc finger 1689 1747 IPR011011 -
Mtr5g0293 1836 SUPERFAMILY FYVE/PHD zinc finger 239 292 IPR011011 -
Mtr5g0293 1836 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 23 891 - -
Mtr5g0293 1836 Pfam PLU-1-like protein 724 885 IPR013637 -
Mtr5g0293 1836 Pfam PLU-1-like protein 1143 1421 IPR013637 -
Mtr5g0293 1836 Pfam PLU-1-like protein 992 1183 IPR013637 -
Mtr5g0293 1836 Pfam PLU-1-like protein 891 975 IPR013637 -
Mtr5g0293 1836 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Mtr5g0293 1836 CDD PHD_RSF1 245 289 - -
Mtr5g0293 1836 Pfam PHD-finger 244 291 IPR019787 -
Mtr5g0293 1836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 292 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0293 Mtr-Chr5 2725078 2747749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0293 23 92 JUMONJI Transcription Factor Family AT1G08620 54.054 3.03e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr5g0293 PLU-1 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0293 K11446 - gmx:100789512 2946.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0293 5 2725078 2747749 Mtr5g0293 5 2725078 2747749 ECH