Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0287 ATGGAGAGGGAAGAAGATGTTAAGGTTGGAGCAAACAAATTCTCAGAAAAGAATGCATTGGGCACAGGAGCTCAGAGTGATAGTAAGGACTACAAAGAAGCACCACCAGCACCTTTGTTTGAGCCAGGAGAGTTGAAGTCATGGTCATTTTATAGAGCTGGGATTGCTGAATTTGTTGCAACTTTCTTGTTCCTTTACATCACTGTCTTGACTGTGATGGGTGTGAATAGGTCACCCTCTAAATGTGCCTCTGTTGGTATTCAAGGAATTGCTTGGGCTTTTGGTGGTATGATCTTTGCTCTTGTCTATTGCACTGCTGGAATTTCAGGTGGGCACATAAATCCAGCAGTGACATTCGGTCTGTTTTTGGCTAGGAAGCTGTCCTTGACAAGAGCAGTATTCTACATAATAATGCAGTGTCTTGGAGCTATCTGTGGTGCCGGCGTAGTGAAGGGCTTTGAAGGTAATGCTCGTTATGAGTTGTACAAAGGTGGAGCAAATGTTGTGAATCCTGGTTACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGTACTTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATGCCAAGAGAAATGCAAGAGACTCTCACGTTCCGATTTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTTCACTTGGCTACAATTCCCATTACTGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTGCTGCCATAATATACAACAGAGACCATGCTTGGAATGACCACTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCACTTGCTGCTTTATATCACCAGATAGTGATCCGAGCAATTCCTTTCAAGGCAAGGGATTAA 864 0.4444 MEREEDVKVGANKFSEKNALGTGAQSDSKDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVNRSPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEGNARYELYKGGANVVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAALYHQIVIRAIPFKARD* 288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0287 287 MobiDBLite consensus disorder prediction 1 35 - -
Mtr5g0287 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Mtr5g0287 287 PANTHER AQUAPORIN PIP1-2-RELATED 3 286 - -
Mtr5g0287 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Mtr5g0287 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 286 IPR034294 -
Mtr5g0287 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Mtr5g0287 287 TIGRFAM MIP: MIP family channel proteins 56 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mtr5g0287 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr5g0287 Mtr-Chr5 2662738 2664602 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0287 3 286 Major Intrinsic Protein MIP AT4G23400 86.972 1.51e-175 484
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0287 K09872 - gmx:100796833 549.666
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0287 5 2662738 2664602 Mtr5g0287 5 2662738 2664602 ECH