Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0285 ATGTCTGCTGATAGTGATATCTATACTATTGATATTTCTTTCCACACACATTCAAGTTCAAACATAGTCTCTTATGATCCTAATTACCCTTTCAATTATATTGAAACAGTTCAAGAGGATTTGAACAATTCTCTTGACTCATTTTCCTCTTCCTTCTTTTCTTTTTCTTCTCCAACCAGTGATCAGCTTGGAAATTTCTCTGCTTTGGATGGGTCTAGTTTGAAAACCAAGGAATGCCAAATGGGTGTAGATTACACCTACTATCAAAAGTTAATGCAGAGGAGCTACAACTGTAACAATTTTCATGAGAAACTTGATTTTCCTTCTGAAGCTTACCATAACACACACATGGATTCCCCAATTTTTCAATGTCATGAATTGAGCTCCCCGGAAAACAGTTTCTTCAATGGACAAATAAGAAGGGCGTGCAGTGCAGGAGATTTGCAGAACATGGCAACACCTGGGTCTCAAACGGATGAAGTAAATTTCAAAGTAGGGCGTTACAGTTTGGAAGAACGAAAAGAAAAAATCTCTAGATATAGAGCCAAGAGAAGCCGGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAGACACTAGCAGACAATCGAACACGCATACGTGGCAGATTCGCACGTAACGACAAAACCAACGAGATTCCAAAACCTGTATGTTCAGAAACAGAACAATATCATGAAGACGTGTTCTGGGTTGATTTCATTGAAGGGTTAAATGACGAGCTCCTCTATTAA 756 0.3849 MSADSDIYTIDISFHTHSSSNIVSYDPNYPFNYIETVQEDLNNSLDSFSSSFFSFSSPTSDQLGNFSALDGSSLKTKECQMGVDYTYYQKLMQRSYNCNNFHEKLDFPSEAYHNTHMDSPIFQCHELSSPENSFFNGQIRRACSAGDLQNMATPGSQTDEVNFKVGRYSLEERKEKISRYRAKRSRRKFNKIIKYACRKTLADNRTRIRGRFARNDKTNEIPKPVCSETEQYHEDVFWVDFIEGLNDELLY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0285 251 PANTHER CCT MOTIF FAMILY PROTEIN 30 248 - -
Mtr5g0285 251 Pfam CCT motif 173 215 IPR010402 GO:0005515
Mtr5g0285 251 ProSiteProfiles CCT domain profile. 173 215 IPR010402 GO:0005515
Mtr5g0285 251 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 30 248 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0285 Mtr-Chr5 2649420 2651752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0285 145 220 C2C2-CO-like Transcription Factor Family AT5G24930 42.105 4.08e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g0285 CCT 6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0285 - - mtr:MTR_5g010120 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0285 5 2649420 2651752 Mtr5g0285 5 2649420 2651752 ECH
Mtr5g0285 5 2649420 2651752 Mtr8g3488 8 45352346 45354562 PCT