Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0284 ATGGGGTTCCCTACGGATATTGTGTTACCAAAGGTGTTTGTACAGATCCTTTCTATACTATCTTTCATCAAAAAACTCATTACCATCTTCTTCTTTTACATCGGTCTCGATTCCGGCTTCGCCTTTCCGGAGAGTTTGCCTGAATTTCAATCAGTTAATCCCTTGCTGCTCATCAGACAAATCCTACCGGTGGTGAAGTTCTCGGAGCTGGAGCTGGAGCTGGAGCTGGCGGTGGAGAGTTGCGCCGTCTGCCTCTGTGAGTTCAAGGCGGAGGATGAGATCCAACGGCTCACAAACTGCCGTCACATTTTCCATAGAAGCTGCCTGGACCGTTGGATGGGATATGATCACACTACATGTCCTTTGTGTCGCACAACGTTCCTACCACATCACATGCTAGATGCATAG 408 0.4828 MGFPTDIVLPKVFVQILSILSFIKKLITIFFFYIGLDSGFAFPESLPEFQSVNPLLLIRQILPVVKFSELELELELAVESCAVCLCEFKAEDEIQRLTNCRHIFHRSCLDRWMGYDHTTCPLCRTTFLPHHMLDA* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0284 135 PANTHER BRH1 RING FINGER PROTEIN 5 134 - -
Mtr5g0284 135 SMART ring_2 81 123 IPR001841 -
Mtr5g0284 135 Pfam Ring finger domain 80 124 IPR001841 -
Mtr5g0284 135 ProSiteProfiles Zinc finger RING-type profile. 81 124 IPR001841 -
Mtr5g0284 135 CDD RING-H2 81 124 - -
Mtr5g0284 135 SUPERFAMILY RING/U-box 80 130 - -
Mtr5g0284 135 SMART ringv_2 80 124 IPR011016 GO:0008270
Mtr5g0284 135 PANTHER RING ZINC FINGER PROTEIN-RELATED 5 134 - -
Mtr5g0284 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 129 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0284 Mtr-Chr5 2646752 2647601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0284 1 132 C3H Transcription Factor Family AT1G63840 46.528 4.73e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0284 K16281 - gmx:102665617 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0284 5 2646752 2647601 Mtr5g0284 5 2646752 2647601 ECH
Mtr5g0284 5 2646752 2647601 Mtr8g3491 8 45383752 45384753 PCT