Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0279 ATGGGTAGCAAAAGCCAAGATAATAATGATAGAGATTTAGTAAAGAAGGTTTTCACTCACAAAGGTCGATACGTGCAATACAGTTTGTATGGAAACTTGTTTGAAGTGTCCTCCAAATATGTTCCTCCTCTTCGCCCTATCGGTAGAGGTGCTTATGGAATCGTCTGTGCTGCTGTTAATTCTGATACACATGAGGAAGTTGCCATCAAGAAGATTGCCAATACATTTGACAACATTATTGATGCTAAAAGGACTTTGAGGGAAATTAAGCTTCTTCGTCACATGGACCATGAAAATATTATTGCTATTAAGGATATTATACGACCTCCACAAAAGGATAATTTTAATGATGTTTACATTGTTTATGAATTGATGGACACTGATCTTCATCAGATTATTCGTTCTAATCAACCTCTCAACCCAGACCATTGTCAGTACTTTCTATATCAGCTGTTAAGGGGACTGAAATATGTGCATTCGGCAAATGTCTTGCACCGTGACCTTAAACCAAGTAATTTACTTTTGAATGGAAACTGTGACCTTAAAATTGGGGACTTTGGTTTGGCAAGGACAACATCCGAAACAGATTTTATGACGGAGTATGTCGTTACTAGATGGTACAGAGCCCCAGAATTGCTCCTTAATTGTTCAGAGTACACATCTGCAATTGATGTCTGGTCTGTTGGTTGCATATTTGCTGAAATTATGACCAGAGAACCCTTGTTTCCTGGGAAGGATTATGTTCATCAACTAAGGCTTATAACCGAGTTGATAGGTTCACCTGACGATTCGAGCCTCAGATTTCTACGAAGTGAAAATGCCAGAAAGTATCTTAGACAGCTTCCACAGTTTGGGAAGCAAAACCTTTCGGTGAAATTTCCTAGTATGTCGGCTGAGCCTCTGAACTTGCTAGAAAAAATGCTTGTATTTGATCCTGTTAAACGAATTACAGTGGATGAGGCACTATGTCACCCATATCTTTCATCACTTCATGACATCAATGATGAACCAGTTCCTCCTACGCCATTCAGTTTTGATTTTGAGCAGCCAGGATGTACTCAAGAGCACATTAAGGAGCTCATCTGGAGGGAATCAGTGAATTTCAATCCCGATCCACCGTCTCAGTAA 1128 0.3963 MGSKSQDNNDRDLVKKVFTHKGRYVQYSLYGNLFEVSSKYVPPLRPIGRGAYGIVCAAVNSDTHEEVAIKKIANTFDNIIDAKRTLREIKLLRHMDHENIIAIKDIIRPPQKDNFNDVYIVYELMDTDLHQIIRSNQPLNPDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNGNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFAEIMTREPLFPGKDYVHQLRLITELIGSPDDSSLRFLRSENARKYLRQLPQFGKQNLSVKFPSMSAEPLNLLEKMLVFDPVKRITVDEALCHPYLSSLHDINDEPVPPTPFSFDFEQPGCTQEHIKELIWRESVNFNPDPPSQ* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0279 375 SUPERFAMILY Protein kinase-like (PK-like) 44 335 IPR011009 -
Mtr5g0279 375 ProSitePatterns MAP kinase signature. 76 179 IPR003527 GO:0004707|GO:0005524|GO:0006468
Mtr5g0279 375 Gene3D Transferase(Phosphotransferase) domain 1 125 354 - -
Mtr5g0279 375 CDD STKc_TEY_MAPK 34 370 - -
Mtr5g0279 375 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0279 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 16 373 - -
Mtr5g0279 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Mtr5g0279 375 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Mtr5g0279 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 373 - -
Mtr5g0279 375 Pfam Protein kinase domain 45 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0279 375 SMART serkin_6 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0279 375 Gene3D Phosphorylase Kinase; domain 1 24 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0279 Mtr-Chr5 2620720 2623322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0279 8 370 MAP Kinase Gene Family AT4G01370 81.267 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Mtr5g0279 Pkinase 6.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0279 - - gmx:100803024 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0279 5 2620720 2623322 Mtr5g0279 5 2620720 2623322 ECH
Mtr5g0279 5 2620720 2623322 Mtr8g3496 8 45464940 45468797 PCT