Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0277 ATGGGTCACCATTCATGCTGTAATCAACAGAAGGTTAAGAGAGGCCTTTGGTCACCTGAAGAAGATGAGAAACTCATTAGATACATTACTACTCATGGTTATGGTTGCTGGAGTGAAGTTCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTAGGTTGAGATGGATAAATTATTTAAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCATGGGGTTGTTGGTAACAGATGGGCTCACATTGCAAGTCACTTGCCTGGTAGAACAGACAATGAAATAAAAAACTATTGGAATTCATGGATCAAAAAGAAAATTAGAAAGTCATCTTCTTCTGCTCCTAATTTATCAACACCAACTATTGATCATCATCATCCTCAGTTGATCAATTATAGTTCCATTAATCAACTAGATAATTACTTTACCAACCAAGAAAATGTAACAACAAAAGAAACCTTATTTTCATCAACATGTCCTTTATTTATGTTTGACACAAGTTCACTGCATGAAACAACAGCAACAGACACCAATGTAATAAGACCAGAAGTACTATTCCATCATGATTCTGTGAGTTTGAGTTCTGACACATGGAACTTGAATCACCATGATCATCATCAACATCATCAAGTTCAGACACTTCCTCCTCATCCAGCTGCAATAGCTTTTACAACAATTCATGATACTAGTAATTATAATCTTCCACCATTGATAGAGAATAATGTGGAAAACAGCATGGTGCCAATTGATCAAGTGCAATCTTGTAATATGGATGAGGAAGGAGGAGAGTTATTAACATTGGAGTCATTGCAATTGCAAAGACAAGAAGAGTTGAATGAATGGGTGGAAACTCAACAACAATGTCCTAGCTTTATTTTCAGCTGGGAGAGTGTTGAAGGACAAATTGGAGGTGAAGAACAAGTACTAGTACCAAACTCATCACATATGGGAACACCTAATTCACTTTCTCCTTTTCCTTCTTCACTATTATGA 1020 0.3696 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSAPNLSTPTIDHHHPQLINYSSINQLDNYFTNQENVTTKETLFSSTCPLFMFDTSSLHETTATDTNVIRPEVLFHHDSVSLSSDTWNLNHHDHHQHHQVQTLPPHPAAIAFTTIHDTSNYNLPPLIENNVENSMVPIDQVQSCNMDEEGGELLTLESLQLQRQEELNEWVETQQQCPSFIFSWESVEGQIGGEEQVLVPNSSHMGTPNSLSPFPSSLL* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0277 339 Gene3D - 6 66 - -
Mtr5g0277 339 PANTHER MYB DOMAIN PROTEIN 55 1 337 - -
Mtr5g0277 339 CDD SANT 17 61 IPR001005 -
Mtr5g0277 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr5g0277 339 PANTHER MYB TRANSCRIPTION FACTOR 1 337 - -
Mtr5g0277 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr5g0277 339 Coils Coil 276 296 - -
Mtr5g0277 339 CDD SANT 69 111 IPR001005 -
Mtr5g0277 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr5g0277 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr5g0277 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr5g0277 339 Gene3D - 68 137 - -
Mtr5g0277 339 MobiDBLite consensus disorder prediction 319 339 - -
Mtr5g0277 339 SMART sant 13 63 IPR001005 -
Mtr5g0277 339 SMART sant 66 114 IPR001005 -
Mtr5g0277 339 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mtr5g0277 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0277 Mtr-Chr5 2604402 2606679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0277 1 317 MYB Transcription Factor Family AT1G63910 49.861 2.79e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g0277 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0277 K09422 K02947 gmx:100803556 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0277 5 2604402 2606679 Mtr5g0277 5 2604402 2606679 ECH
Mtr5g0277 5 2604402 2606679 Mtr8g3498 8 45479364 45481733 PCT