Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0272 ATGGCGCAAGAACTCGAAAACAAAGCCAAAGAAGCTTTTTTCGACGACGATTTTACACTCGCCGTTGATTTCTATTCTCAAGCCATCGAAATCGATCCCACCAACGCTAATCTCTTTGCCGATCGAGCACAATCGCATATCAAACTCAACGCTTTCACTGAAGCTGTTTCTGATGCTAATAAGGCTATTCAATTGAACCCTAATTTGTCTAAAGCTTATCTTCGCAAAGGGACTGCTTGTATTAATCTTGAAGAATATCATACTGCTAAGGTTGCACTTGAAAAGGGGGCTTCTTTTGCACCTGATGATTCCAGATTCACTAATTTGATTCAACAATGTCAACGCTTCATTGCTGCTGAGGAATCTGAAAGTCTTACGAGCACCCTACCACCAAATGGACCCAAATCATCTGTTGCGTCTGTTGATGATACCCATATGTGTGATAAGAGTGATGAAACATCCAAAGAACCTCAAAGAGACAGTCCTGCATCCCAAACAAATGCAGTTGCACCAGTCAGACCAAAATACAGGCATGAATATTACCAGAAGCCAGAAGAAGTGGTTGTGACAATATTTGCAAAAGGGATACCAGCAGAAAATGTTGTTGTGGACTTCGGCGAACAGATTCTGAGTGTTACCATTGATGTTCCTGGCCAAGATGCCTACCATTACCAACCTAGATTGTTTGGAAAGATAATACCTGATAAGTGCAAAGTTGTGGTTTTGTCAACCAAAATTGAGATTCGTCTGGCAAAAGCTGAAGCAGTTAATTGGACATCTCTGGAATATAGCAAGGATGTGCTTCCCCAAAAGATAATCGTGCCCTCAGTTCAATCTGAAAGGCCTGCATATCCGTCATCAAAGTCAAGGACTAAGGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGACGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTCTGGAGTCAAATGGAACAGTGCTTTCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGAAGTCCTCCGGAAGGCATGGAGGTGAAGAAATGGGAGTATTGA 1125 0.4187 MAQELENKAKEAFFDDDFTLAVDFYSQAIEIDPTNANLFADRAQSHIKLNAFTEAVSDANKAIQLNPNLSKAYLRKGTACINLEEYHTAKVALEKGASFAPDDSRFTNLIQQCQRFIAAEESESLTSTLPPNGPKSSVASVDDTHMCDKSDETSKEPQRDSPASQTNAVAPVRPKYRHEYYQKPEEVVVTIFAKGIPAENVVVDFGEQILSVTIDVPGQDAYHYQPRLFGKIIPDKCKVVVLSTKIEIRLAKAEAVNWTSLEYSKDVLPQKIIVPSVQSERPAYPSSKSRTKDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMEVKKWEY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0272 374 MobiDBLite consensus disorder prediction 122 139 - -
Mtr5g0272 374 CDD p23_CS_SGT1_like 179 262 - -
Mtr5g0272 374 Gene3D - 174 265 IPR008978 -
Mtr5g0272 374 MobiDBLite consensus disorder prediction 122 169 - -
Mtr5g0272 374 PANTHER PROTEIN SGT1 HOMOLOG 1 374 IPR044563 GO:0051087
Mtr5g0272 374 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Mtr5g0272 374 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Mtr5g0272 374 SUPERFAMILY HSP20-like chaperones 170 268 IPR008978 -
Mtr5g0272 374 Pfam SGS domain 292 372 IPR007699 -
Mtr5g0272 374 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Mtr5g0272 374 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Mtr5g0272 374 Gene3D Tetratricopeptide repeat domain 1 129 IPR011990 GO:0005515
Mtr5g0272 374 MobiDBLite consensus disorder prediction 354 374 - -
Mtr5g0272 374 SMART tpr_5 2 35 IPR019734 GO:0005515
Mtr5g0272 374 SMART tpr_5 36 69 IPR019734 GO:0005515
Mtr5g0272 374 SMART tpr_5 70 103 IPR019734 GO:0005515
Mtr5g0272 374 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Mtr5g0272 374 MobiDBLite consensus disorder prediction 142 158 - -
Mtr5g0272 374 ProSiteProfiles CS domain profile. 173 262 IPR007052 -
Mtr5g0272 374 Pfam CS domain 177 252 IPR007052 -
Mtr5g0272 374 ProSiteProfiles SGS domain profile. 283 374 IPR007699 -
Mtr5g0272 374 PANTHER PROTEIN SGT1 HOMOLOG A 1 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0272 Mtr-Chr5 2560989 2565329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0272 1 108 U-box Gene Family AT3G07370 30.556 4.65e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0272 K12795 - gmx:100784022 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0272 5 2560989 2565329 Mtr5g0272 5 2560989 2565329 ECH