Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0269 ATGGCTGGTTGTTATCTTTGCAGATTCAAAGTAGATATGGTTCTTCCAATTGTGAAACTTCCTTCACAAGGTCTACCTCAGAGACAGCTTTGGCGCGGTTATCTGACCTATTTGGTTCATTTGCACTCTTTCCACAACGAGAAGAGAATCAAGCCTTTAGTTGCAGGCAAAATCCACAGGCAAAGCAGTGGCTCAGACCTCCGACAAATGGAGGCTGAAGGATCTTATTCTAAGCTGCGTAGAAATGCATCAGCCTCTGCAAATATTAGCAGCATTGGTTTGCAAAGCAATCCTACAAACTCAGCTCCTGGGAAACACATAACCGGCTGGCCTTTTGATGAGAAGATTCTTATACAGACTCTTTACAAGTTTGATGATTGGAAAATTCACTTGCAGGTTCTACTTTATGTGTCAAAGACCTATCCCATTGTTCTATATATGCGGGATGCTGATAAGTTGTTGTGTAGATCACAAAGGATATATAAACTATTCCAGACAATGTTAACGAAACTATCTGGACCAATTTTGATTATTGGTTCGCGGATTTTGGATTCTGGTAATGAATGCAAAAGAGTAGATGAGATGCTTACCTCTCTCTTCCCTTACAACATAGAAATCAAACCACCAGAAGATGAATCTCGTCTTGTCAGCTGGAAGTCTCAATTTGAAGCGGATATGAAGAAGATACAGATTCAAGATAACAAGAACCATATCATGGAAGTGTTAGCAGCCAATGATCTTGATTGTCATGACCTGGATTCCATCTGTGTAGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATCGTGTCAGCAATTTCGTATCATATAATGAAGAACAAAGAGCCTGAATACAGAAATGGAAAACTGATCATTCCATGCAACAGTTTGTCCCATGCTCTGGGAATATTCCAGGCGGGAAAATTCGGTGACAGAGATTCATTGAAGTTAGAAGCTCAAGCAGTAACATCTGAGAAAAAAGAGGAAGGAGCTGCTGTGAAACCAGAAGGAAAGACTGAAAGTCCTGCACCTGCTGTAAAGACTGAAGCAGAAATACCAACTTCAGTGCGCAAAACTGATGGTGAAAATTCAGTTCCTGCATCCAAAGCTGAAGTTCCTGATAATGAGTTTGAGAAGCGAATAAGACCTGAAGTAATCCCAGCAAATGAAATTGGGGTAACATTCTCCGACATTGGTGCCTTAGACGAGACTAAAGATTCACTTCAAGAACTAGTAATGCTTCCCCTTCGAAGGCCAGACCTTTTTGAAGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCACCTGGAACAGGAAAAACAATGCTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATTAATGTATCCATGTCTACCATCACTTCTAAATGGTTTGGTGAAGACGAGAAGAATGTCCGAGCTTTATTCACACTGGCAGCCAAGGTCTCCCCAACTATTATATTTGTCGATGAGGTTGACAGTATGCTTGGGCAGCGAACAAGAGTTGGGGAACATGAAGCCATGCGGAAAATAAAGAATGAATTCATGTCCAATTGGGATGGACTTACCTCGAAATCAGAGGATCGTATTCTTGTCCTCGCTGCAACCAATAGGCCCTTTGACTTGGATGAAGCAATTATTAGACGATTTGAAAGAAGGATTATGGTTGGGCTACCGTCCGCAGAGAACAGAGAAAATATATTGAGGACCCTTTTGGCTAAAGAGAAGGTGCACGGGGGACTTGATTTTAAGGAACTCGCAACTATGACTGAAGGATATAGTGGAAGTGATCTGAAGAACTTATGCACAACCGCTGCTTATAGACCTGTTAGAGAGCTAATTCAGCAAGAGATACAAAAGGATTCGCAGAAAAAGAAGAAAGATGCCGAAGGACAAAATAGCCAAGATGCTCAGGATGCGAAAGAGGAAGTTGAGCAGGAAAGAGTTATTACCCTTAGGCCTTTGAATATGCAGGACTTCAAAATGGCAAAGAGTCAGGTTGCCGCGAGCTTCGCAGCTGAGGGGGCTGGAATGAATGAGTTGAGGCAGTGGAATGACCTGTATGGAGAAGGCGGTTCAAGAAAGAAAGAGCAATTATCTTACTTCCTATGA 2136 0.4213 MAGCYLCRFKVDMVLPIVKLPSQGLPQRQLWRGYLTYLVHLHSFHNEKRIKPLVAGKIHRQSSGSDLRQMEAEGSYSKLRRNASASANISSIGLQSNPTNSAPGKHITGWPFDEKILIQTLYKFDDWKIHLQVLLYVSKTYPIVLYMRDADKLLCRSQRIYKLFQTMLTKLSGPILIIGSRILDSGNECKRVDEMLTSLFPYNIEIKPPEDESRLVSWKSQFEADMKKIQIQDNKNHIMEVLAANDLDCHDLDSICVADTMVLSNYIEEIIVSAISYHIMKNKEPEYRNGKLIIPCNSLSHALGIFQAGKFGDRDSLKLEAQAVTSEKKEEGAAVKPEGKTESPAPAVKTEAEIPTSVRKTDGENSVPASKAEVPDNEFEKRIRPEVIPANEIGVTFSDIGALDETKDSLQELVMLPLRRPDLFEGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSNWDGLTSKSEDRILVLAATNRPFDLDEAIIRRFERRIMVGLPSAENRENILRTLLAKEKVHGGLDFKELATMTEGYSGSDLKNLCTTAAYRPVRELIQQEIQKDSQKKKKDAEGQNSQDAQDAKEEVEQERVITLRPLNMQDFKMAKSQVAASFAAEGAGMNELRQWNDLYGEGGSRKKEQLSYFL* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0269 711 Gene3D - 394 653 IPR027417 -
Mtr5g0269 711 MobiDBLite consensus disorder prediction 324 378 - -
Mtr5g0269 711 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 55 711 - -
Mtr5g0269 711 ProSitePatterns AAA-protein family signature. 538 557 IPR003960 GO:0005524|GO:0016887
Mtr5g0269 711 Pfam ATPase family associated with various cellular activities (AAA) 435 565 IPR003959 GO:0005524|GO:0016887
Mtr5g0269 711 MobiDBLite consensus disorder prediction 625 653 - -
Mtr5g0269 711 CDD AAA 433 566 - -
Mtr5g0269 711 Pfam AAA+ lid domain 589 628 IPR041569 -
Mtr5g0269 711 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 55 711 - -
Mtr5g0269 711 Coils Coil 635 655 - -
Mtr5g0269 711 Gene3D - 567 650 - -
Mtr5g0269 711 SMART AAA_5 431 568 IPR003593 -
Mtr5g0269 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 632 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0269 Mtr-Chr5 2500969 2505839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0269 395 625 Calmodulin-binding Proteins AT3G56690 38.034 1.03e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0269 - - gmx:100808011 1022.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0269 5 2500969 2505839 Mtr5g0269 5 2500969 2505839 ECH
Mtr5g0269 5 2500969 2505839 Mtr8g3514 8 45726259 45732963 PCT