Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0268 ATGGGCAACCGCATCAGCTCCAAACACAAACCCTCTTCCGATTCCCAAACCCGTTCCAAATCAGAACCCTCACATTCCACTCCCACTTCCTTCCATCCTCCTAATCGAACCCCCAAACAATCCACTCACACCCCCACCCCTTCCTCCTCCCCCCTCGGCCGCGTCTTAGGCAAACCCATGGAAGACGTCCGATCAACCTACACCTTCGGCCGTGAACTCGGTCGCGGCCAATTCGGTGTAACCTACTTAGTTACACACAAACTCACCAAAGAACAATTCGCCTGCAAATCTATAGCCACTCGGAAACTAATCCGCCGCGATGATCTTGACGATATTCGCCGTGAAGTTCAGATCATGCATCATCTCACCGGTCACCGGAACATTGTTGAGCTTAAAGGTGCTTATGAGGATCGTCATTCGGTTAATCTTATCATGGAGCTTTGTGCTGGTGGTGAGCTTTTTGATAGGATTATATCCAAAGGTCATTACTCTGAACGTGCTGCGGCTGAGCTGTGTCGCCAGATTGTCACTGTTGTTCATAATTGTCATACTATGGGTGTTATGCATAGGGATTTGAAGCCTGAGAATTTCTTGTTTCTTAGTAAGCATGAGAATTCGCCGCTTAAAGCTACAGATTTTGGTCTCTCCGTGTTTTTCAAGCCCGAAGATGTATTCAAAGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAGGTGTTGCGTAGAAGCTATGGACCTGAAGCTGATATTTGGAGTGCTGGGATTATTTTGTACATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGAAAATGAACAAGGTATCTTCGATGCTATTCTTCGTGGACATCTTGATTTCGCATCTGATCCTTGGCCTAAAATATCGAGTATTGCTAAAGATCTGATCAAAAAGATGTTGCGAGCTGACCCTAAAGAACGAATTTCAGCTGTTGAAGTCCTTGACCATTCTTGGATGAAAGAAGATGGAGCATCCGATAAGCCTCTTGATATTGCTGTCTTAACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTAAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATAGGCTTGAAGGAAATGTTTAAATCCATGGATACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTAGGTACTAAGATTTCGGAATCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTTGACGGAAATGGAACCATTGATTATATTGAATTTATAACAGCTACCATGCACTTGAATAGAATGGAAAGAGAGGACCACCTATACAAAGCTTTTGAATATTTTGACAACGACAAAAGCGGGTATATTACAAAAGAAGAGTTGGAATCTGCCCTTACAAAGTACAACATGGGTGATGAGAAAACAATAAAGGAGATAATTGACGAAGTTGATTCAGACAATGATGGAAGAATTAACTATGAGGAGTTTGTAGCCATGATGAGGAAAGGCAATCCAGACTTGATAACCAACAAACGTCGCAAATAA 1554 0.4286 MGNRISSKHKPSSDSQTRSKSEPSHSTPTSFHPPNRTPKQSTHTPTPSSSPLGRVLGKPMEDVRSTYTFGRELGRGQFGVTYLVTHKLTKEQFACKSIATRKLIRRDDLDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAELCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKHENSPLKATDFGLSVFFKPEDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGIILYILLSGVPPFWAENEQGIFDAILRGHLDFASDPWPKISSIAKDLIKKMLRADPKERISAVEVLDHSWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHLNRMEREDHLYKAFEYFDNDKSGYITKEELESALTKYNMGDEKTIKEIIDEVDSDNDGRINYEEFVAMMRKGNPDLITNKRRK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0268 517 Pfam Protein kinase domain 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0268 517 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Mtr5g0268 517 ProSiteProfiles Protein kinase domain profile. 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0268 517 SMART serkin_6 67 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0268 517 MobiDBLite consensus disorder prediction 17 51 - -
Mtr5g0268 517 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 509 - -
Mtr5g0268 517 Gene3D Transferase(Phosphotransferase) domain 1 153 332 - -
Mtr5g0268 517 SUPERFAMILY EF-hand 363 504 IPR011992 -
Mtr5g0268 517 Pfam EF-hand domain pair 372 432 IPR002048 GO:0005509
Mtr5g0268 517 Pfam EF-hand domain pair 442 504 IPR002048 GO:0005509
Mtr5g0268 517 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Mtr5g0268 517 Gene3D - 333 507 - -
Mtr5g0268 517 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 26 509 - -
Mtr5g0268 517 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Mtr5g0268 517 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Mtr5g0268 517 ProSiteProfiles EF-hand calcium-binding domain profile. 439 473 IPR002048 GO:0005509
Mtr5g0268 517 SUPERFAMILY Protein kinase-like (PK-like) 40 333 IPR011009 -
Mtr5g0268 517 CDD STKc_CAMK 67 324 - -
Mtr5g0268 517 Gene3D Phosphorylase Kinase; domain 1 69 152 - -
Mtr5g0268 517 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Mtr5g0268 517 MobiDBLite consensus disorder prediction 1 59 - -
Mtr5g0268 517 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Mtr5g0268 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Mtr5g0268 517 SMART efh_1 443 471 IPR002048 GO:0005509
Mtr5g0268 517 SMART efh_1 371 399 IPR002048 GO:0005509
Mtr5g0268 517 SMART efh_1 478 506 IPR002048 GO:0005509
Mtr5g0268 517 SMART efh_1 407 435 IPR002048 GO:0005509
Mtr5g0268 517 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0268 Mtr-Chr5 2492218 2497368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0268 53 516 EF-hand Containing Proteins AT4G23650 80.000 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr5g0268 Pkinase 2.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0268 K13412 - gmx:100808536 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0268 5 2492218 2497368 Mtr5g0268 5 2492218 2497368 ECH
Mtr5g0268 5 2492218 2497368 Mtr8g3517 8 45755992 45761256 PCT