Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0257 ATGACAACAAAGAAAAACACTCACCTCCTTAACCTTACAAAAGAAAACACACCAAAACAACCATTTCCAAAAATAGTAAGAATAACTGTCACAGACAATGATGCTACAGATTGTTCCAGCGACGAAGAAGAATCATACACCACGCACTTCTTAGATCGTAACCGAGGTATAAAGTTTGTTGATGAGATTATCATAGAGCCATGTACTGTGAGCAAGAATAATAACACTATTAGCAACGGCAACGGTAACGGCGTCGTTTCGAGGAAAAGAAACAGAAACAGAACCACCGGAGGAAGAAAAACAAGAGCTCCGGTTAGTATTCCGGCGAAGAAATACCGTGGAGTGAGGCAGAGACCATGGGGAAAATGGGCGGCGGAGATAAGAGACCCGGCGCGTGGAGTGCGTGTGTGGCTTGGTACATTTCAAACGGCTGAAGAAGCTGCTATTGTGTACGACAACGCGGCTATTAAGTTGCGTGGACCAGACGCGCTAACTAATTTCATAACTCCACCTGTAAGTGCAGCTGCCACGTGTCAGTTATCATCACCACCACCGGAAAATGAAATTCCTCTTTCGTCATTACCGTTACCGGCAAACTCCGGTGAAGAATCTCAATCTCAAAACAATAATAATAAGAGTTTATTTTCTCCTACTTCAGTTCTTCAATGTTGTTCATCTTCTGAAGAAGTAGCTGAATCTGAATCAATGTTTTCAATTCCAAGTGATATACAGTTTGATTTTCAAGATTCTTCACAAGCAAATGATGCATTTTACAACTTCAATGGATTCTCAGAGAGCATGTTATATGGTGATATTGGTTTTGAGTATTTCGATTTTGGGTTAGAAAGCTTGCAGACACATAAGGATGAAGACTTTTTTCAAGATATTGATGATTTATTTGCTTCAGATACTACTGTTCTTGCTCTTTAA 930 0.4032 MTTKKNTHLLNLTKENTPKQPFPKIVRITVTDNDATDCSSDEEESYTTHFLDRNRGIKFVDEIIIEPCTVSKNNNTISNGNGNGVVSRKRNRNRTTGGRKTRAPVSIPAKKYRGVRQRPWGKWAAEIRDPARGVRVWLGTFQTAEEAAIVYDNAAIKLRGPDALTNFITPPVSAAATCQLSSPPPENEIPLSSLPLPANSGEESQSQNNNNKSLFSPTSVLQCCSSSEEVAESESMFSIPSDIQFDFQDSSQANDAFYNFNGFSESMLYGDIGFEYFDFGLESLQTHKDEDFFQDIDDLFASDTTVLAL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0257 309 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Mtr5g0257 309 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Mtr5g0257 309 CDD AP2 110 167 IPR001471 GO:0003700|GO:0006355
Mtr5g0257 309 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Mtr5g0257 309 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Mtr5g0257 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 303 - -
Mtr5g0257 309 MobiDBLite consensus disorder prediction 75 91 - -
Mtr5g0257 309 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Mtr5g0257 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 303 - -
Mtr5g0257 309 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Mtr5g0257 309 MobiDBLite consensus disorder prediction 75 103 - -
Mtr5g0257 309 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Mtr5g0257 309 MobiDBLite consensus disorder prediction 178 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0257 Mtr-Chr5 2374481 2376433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0257 24 303 AP2-EREBP Transcription Factor Family AT4G23750 38.413 1.22e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0257 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0257 - - mtr:MTR_5g009620 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0257 5 2374481 2376433 Mtr5g0257 5 2374481 2376433 ECH
Mtr5g0257 5 2374481 2376433 Mtr8g3526 8 45885028 45886190 PCT