Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0254 ATGAAAACATACCATCTCACTCCAAAAAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTCTGACGGTGGAGCTGAAAAAAAGTGCTGAAGAGCGAGTTACATTAAGATGGGTCTTCAGGAAATATAATGAAGGAAGTGTGGTGGCACTGCTTGATCCTTTAATGCAAGAAGCTGTAAAAACTGATGTTGCTGTGAAGATGTTTGATTTGGCATTTAATTGTGCAGCACCAGTAAGATCAGATAGACCTGACATGAAAACAGTGGGTGAGCAATTATGGGCAATAAGGCAGATTACCTCAAGAGTATTAGTAGCACAACTTCAAGGAGAGAATGATTGGTGA 348 0.3851 MKTYHLTPKSDVYSFGILLLEILTVELKKSAEERVTLRWVFRKYNEGSVVALLDPLMQEAVKTDVAVKMFDLAFNCAAPVRSDRPDMKTVGEQLWAIRQITSRVLVAQLQGENDW* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0254 115 PANTHER OS07G0166700 PROTEIN 1 100 IPR045272 GO:0004714|GO:0006468
Mtr5g0254 115 Pfam Protein tyrosine and serine/threonine kinase 2 94 IPR001245 GO:0004672|GO:0006468
Mtr5g0254 115 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 3-RELATED 1 100 - -
Mtr5g0254 115 Gene3D Transferase(Phosphotransferase) domain 1 1 111 - -
Mtr5g0254 115 SUPERFAMILY Protein kinase-like (PK-like) 3 101 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0254 Mtr-Chr5 2343325 2344870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0254 3 94 Receptor kinase-like Gene Family AT5G59660 38.043 1.31e-14 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Mtr5g0254 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0254 - - mtr:MTR_5g009570 230.335