Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0247 ATGGAAGAAAAACGACGTTCCCATTCCCAAAATAAGGCAAATATCTCCCCAAACACAAGTCAAACCTCTGAAGCTGGTGGAGAAGTGAGCAGCACTGAGTGGGAGTTCATAGAGATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACGACCTAGTTGGAGATAGGTGGAATTTGATAGCAGGTCGCATTCCAGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACACTGATGCTTTTTCTGCCAAAAGAAAGAAGTGA 276 0.4457 MEEKRRSHSQNKANISPNTSQTSEAGGEVSSTEWEFIEMSEQEEDLIRRMYDLVGDRWNLIAGRIPGRKAEEIERFWIMRHTDAFSAKRKK* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0247 91 CDD SANT 38 77 IPR001005 -
Mtr5g0247 91 MobiDBLite consensus disorder prediction 11 29 - -
Mtr5g0247 91 SUPERFAMILY Homeodomain-like 40 78 IPR009057 -
Mtr5g0247 91 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 18 88 - -
Mtr5g0247 91 Gene3D - 39 80 - -
Mtr5g0247 91 MobiDBLite consensus disorder prediction 1 32 - -
Mtr5g0247 91 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 18 88 - -
Mtr5g0247 91 Pfam Myb-like DNA-binding domain 39 78 IPR001005 -
Mtr5g0247 91 SMART sant 35 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0247 Mtr-Chr5 2278865 2280187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0247 39 77 MYB Transcription Factor Family AT5G52600 58.974 3.03e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g0247 Myb_DNA-binding 4.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0247 K09422 - gmx:100814431 115.931