Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0245 ATGGATGGAATTCAAAACAGAGATATTGGATCATGTTTATCAAATCTCATATTATCAAGTTCAACAAACACACTTGACTCTATTTTCTCAGATATTCCTTCAACAAACACCACCACAGACAGCACAACCTTCTTGGGCTGTTCAAATTTTGAACCTTTAGGTTCCTCTGTTTACCTTCGCCAGAGAGATATTTTACAAAAATTCTACGAAGAAAGCCGATTAAACGGCTCATTCGTTCCTTCTTCATTTTCAAATCAATCTCTACTAACCCCTTCATTATACACAACAAATTCAACTTCAATTTCAAGTTCGTTCACTTCTTTGGTGAACCCTTGTAAGAAGAAGCTATACAGAGGAGTGAGACAGAGACACTGGGGAAAATGGGTGGCTGAGATTAGACTTCCTCAGAATAGAATGAGAGTTTGGCTTGGAACTTATGAAACTGCTGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAGCTTCGAGGCGAATACGCGCGTTTAAATTTTCCAAATTTGAAAGATCCAACTAAGTTGGGTTTTGGAGATTCTACTAGATTGAATGCTTTGAAGAATTCTGTTGATGCTAAAATTCAAGCTATTTGTCAAAAAGTGAAAAGGGAAAAAGCTAAAAAGATTGCTGCAAAGAAGATGAAGAAGAATTCAGGTAGTAATAATCATGATACAAAGAGTGATAAAAATTCAGACAAGATTATTAACTCATCTTCTTGTTCTTCTTCTTCGTCTTCGTTACCGCTTTCACCACTTGTTTTTTGTGATGATTGGGTGAATGAATTGTTTTCACCAACTGTTTCTGAGGATGGAATTTGGAAAGGGGAGAATTCTCCGAATTCGGTTTCGACAATGGTGACAGAGGAAACAGAGTTTGAAGATTGCTCCTTAGCAAGAATGCCATCTTTTGATCCTGAATTGATTTGGGAAGTTCTTGCTGTTTAG 963 0.3707 MDGIQNRDIGSCLSNLILSSSTNTLDSIFSDIPSTNTTTDSTTFLGCSNFEPLGSSVYLRQRDILQKFYEESRLNGSFVPSSFSNQSLLTPSLYTTNSTSISSSFTSLVNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTRLNALKNSVDAKIQAICQKVKREKAKKIAAKKMKKNSGSNNHDTKSDKNSDKIINSSSCSSSSSSLPLSPLVFCDDWVNELFSPTVSEDGIWKGENSPNSVSTMVTEETEFEDCSLARMPSFDPELIWEVLAV* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0245 320 Pfam AP2 domain 117 166 IPR001471 GO:0003700|GO:0006355
Mtr5g0245 320 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Mtr5g0245 320 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Mtr5g0245 320 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 319 - -
Mtr5g0245 320 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 319 - -
Mtr5g0245 320 CDD AP2 115 175 IPR001471 GO:0003700|GO:0006355
Mtr5g0245 320 Gene3D AP2/ERF domain 116 174 IPR036955 GO:0003700|GO:0006355
Mtr5g0245 320 MobiDBLite consensus disorder prediction 215 254 - -
Mtr5g0245 320 MobiDBLite consensus disorder prediction 238 254 - -
Mtr5g0245 320 SUPERFAMILY DNA-binding domain 116 173 IPR016177 GO:0003677
Mtr5g0245 320 MobiDBLite consensus disorder prediction 223 237 - -
Mtr5g0245 320 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Mtr5g0245 320 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0245 Mtr-Chr5 2259259 2260658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0245 8 319 AP2-EREBP Transcription Factor Family AT1G64380 48.485 1.77e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr5g0245 AP2 4.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0245 - - lja:Lj0g3v0046879.1 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0245 5 2259259 2260658 Mtr5g0245 5 2259259 2260658 ECH