Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0237 ATGTGTGACAAGAGACATTGTGGAAACTCGTCGGATCTTTTTTTTGAGTTCCCATTCCAATTAAGAAAAGAAAATCAAATTAACAATGCTCAAAGTGATCGATGTGTGTACCCAGGATTTGAAGTTGTTTGCAAGAATAAGCAACCTTTGATTACACTCTCAAATGGAAGAGAATTTGTTGTCAAACATATTTACCGTGAGAGACAAAGAATTTTGGTCAAGGATCTCAATGATTGTCCACCAAGAAGGTTCATTCAAAACATAGACATAGACATCGACGATGATTCACCTTTCCAATTGGACAAGTCTTATGAAAATGACCATTATGAAAACGTAATATTTCTCAATTGTACCAACAATGTTGAAAAGGAACCATTTGATGATCTTCCTAATATACCTTGTCTAAGCAGTGGCAGTTATACGATTGTGTATACCATAGAATCACCTCTTACTAATTTGTGGAATTCATCGTGTAGTAAAATTGGGTTTGCTAAGGTTCCAGTCACAAATAATTCTGGTGAACCAATGGTAATACTAAACTCTGATATATTATTGCGATGGAATACACCTCTTTGTAAGTGTGAAGCAGATCAATCTTGTGGCTTTCTAGCCGATACGGGTCTTTCTGTTACTTGTTACGATACAAACGGTTATTTTGGTCCCCCAGGTGGGAATGCTACAGCTCCAAAGGCTAAAAATATATACTTTTTTCCAGTGGTATGGGGAATATCTGGACTTTTGTTCTTCATGTGGGTAACTTTATCTGTATGTAAAGATAGACAGCAAAACCATACCCAACAAACACAAACAATTACGAACATAGAACCAAGTAATCAGGAACCTCATTGGTTTGTGTTTGGACTTGATCATTCAAGGATAGAACAATATCCAAAGATTCAACTTGCAGAGAATGGACAATTGCCAAAATTCATTGACAATGTTTGTTCCATATGTCTTAGTGAGTACAAACCAATGGAGACATTAAGAAGTATACCTCAATGTAATCATCATTTCCATGCAGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGCCCTTTATGTAGAAATTTGCCTGAGTGA 1086 0.361 MCDKRHCGNSSDLFFEFPFQLRKENQINNAQSDRCVYPGFEVVCKNKQPLITLSNGREFVVKHIYRERQRILVKDLNDCPPRRFIQNIDIDIDDDSPFQLDKSYENDHYENVIFLNCTNNVEKEPFDDLPNIPCLSSGSYTIVYTIESPLTNLWNSSCSKIGFAKVPVTNNSGEPMVILNSDILLRWNTPLCKCEADQSCGFLADTGLSVTCYDTNGYFGPPGGNATAPKAKNIYFFPVVWGISGLLFFMWVTLSVCKDRQQNHTQQTQTITNIEPSNQEPHWFVFGLDHSRIEQYPKIQLAENGQLPKFIDNVCSICLSEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0237 361 SMART ring_2 315 356 IPR001841 -
Mtr5g0237 361 Pfam Wall-associated receptor kinase galacturonan-binding 2 75 IPR025287 GO:0030247
Mtr5g0237 361 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Mtr5g0237 361 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 360 - -
Mtr5g0237 361 Pfam Ring finger domain 314 357 IPR001841 -
Mtr5g0237 361 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 2 360 - -
Mtr5g0237 361 SUPERFAMILY RING/U-box 314 358 - -
Mtr5g0237 361 CDD RING-H2_PA-TM-RING 314 357 - -
Mtr5g0237 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 360 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0237 Mtr-Chr5 2163797 2165910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0237 2 360 C3H Transcription Factor Family AT2G46495 30.623 5.41e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0237 - - mtr:MTR_5g009190 462.611