Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0236 ATGGATGATCCCAATGATTGTCCACCAAGAAGGTTCCTTCAAAACATAGACCTCAACGATGATTCACTTTTCCAACGGGACAGACTTTATCATAGTACTCATTATGAAAACGTAACATTTCTCAATTGTACTAAAAATGCAAAGGAACCAATGTTTGATCATCTTCCTAATAATATACCTTGTCTAAGCAATGACAACTATTTGATCATGTATGCGTTACAATCACTTCTTGGTAATTTGTGGAGTCCATCGTGTCATGAGATTGGATCTGCTAAGGTTCCAGTTAAAGATAAATCCGGTCAACCAATGGTTATCATGGAAGGACTTTACTCTAATTTAATGTTGCGATGGAATACACCTCTTTGTGGTTGCAAAGCACCACAATATTGTGGCTTTGCATCGGATAGGGGTCTTGATGTTACTTGTTACGGTTACTTTGATAATATGCCAGGCGTAAATCCTCCAAGTCCAAAGCATGAAAATATCTACTTTTTTGAAGTAGTATGGGGAGTAACTGGAATTTTGCTCCTCATGGGGGTAACTCTATCCCTATGTAAAGATAGACAGCAAAACCATATCCAGCAAACACAAACAATTATCATCATAGAACCAAGTGATCGGGAACCCTCTTGGTTTGTGTTTGGACTTGATCATTCAAGGATAGAACAATATCCAAAGATTCAACTAGTAGAGAGTGGACAATTGCCTAAGTCCATTGACAATGTTTGTTCCATATGTCTTGGTGAGTACAAACCCATGGAGACATTAAGGAGTATACCTCAATGTAATCATCATTTCCATGCAGATTGTATAGATGTTTGGCTCAAGATGAATGCTACTTGCCCTTTATGTAGAAATTTGCCTGAGTGA 870 0.3793 MDDPNDCPPRRFLQNIDLNDDSLFQRDRLYHSTHYENVTFLNCTKNAKEPMFDHLPNNIPCLSNDNYLIMYALQSLLGNLWSPSCHEIGSAKVPVKDKSGQPMVIMEGLYSNLMLRWNTPLCGCKAPQYCGFASDRGLDVTCYGYFDNMPGVNPPSPKHENIYFFEVVWGVTGILLLMGVTLSLCKDRQQNHIQQTQTIIIIEPSDREPSWFVFGLDHSRIEQYPKIQLVESGQLPKSIDNVCSICLGEYKPMETLRSIPQCNHHFHADCIDVWLKMNATCPLCRNLPE* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0236 289 CDD RING-H2_PA-TM-RING 242 285 - -
Mtr5g0236 289 Pfam Ring finger domain 242 285 IPR001841 -
Mtr5g0236 289 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 2 288 - -
Mtr5g0236 289 SMART ring_2 243 284 IPR001841 -
Mtr5g0236 289 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 288 - -
Mtr5g0236 289 SUPERFAMILY RING/U-box 242 286 - -
Mtr5g0236 289 ProSiteProfiles Zinc finger RING-type profile. 243 285 IPR001841 -
Mtr5g0236 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 288 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0236 Mtr-Chr5 2159323 2160285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0236 3 288 C3H Transcription Factor Family AT2G46495 31.081 2.90e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0236 - - mtr:MTR_5g009190 425.246