Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0227 ATGGAATCTATGTTACAAGAAGAAGGGTCTTCATCAGTAACTTGTTCACCTCTACAGTTATTTTCCATGATGTCAGTTTCACCTAACATAGGAGGAATAGGATCACCTTATCCATGGCTTAGTAGAGAATTGAAATCTGAGGAAAGGGGTTTGTATTTGATCCATTTGTTAATCACTTGTGCAAACCATGTAGCTTCTGGTAGTCTTGAAAATGCAAACACAACACTTGAACAGATTTCTCAGCTTGCAACTCCTGATGGAGACACTATGCAGAGAATTGCTGCATATTTCACTGAAGCACTTGCTGATAGGATACTCAAAACCTGGCCAGGACTCCATAGAGCCTTAAATTCCACAAGAATTATTATGCTTTCTGAAGAAATTATGGTTCAGAAATTTTTCTTTGAGCTTTTCCCTTTTTTGAAGGTAGCATATATTTTGACAAATCAAGCTATTGTTGAATCTATGGAAGGTGAGAAAATGGTTCATATAATTGATCTTAATGCTGCTGAACCTGCACAATGGATTGCTCTTTTACAAGTTTTGAGTGCAAGACCTGAAGGTCCTCCTCATTTGAGAATCACAGGGATTCATCAACAGAAAGAGGTTTTGGAGCAAATGGGCCATAAGCTTTCTGAAGAAGCTGAGAAATTAGATATACCATTCCAATTCAACCCTGTTCTTAGCAAGCTAGAAAATCTTGATTTTGACAAACTTCGTGTGAAAACCGGCGAGGCGCTTGCTATTAGTTCTATTCTGCAGTTACATTCCCTTTTGGCCTTGGATGATGAATCATCCTCAAGGAGAAAAACTCCTATTCTGTCAAGAAACTCAAATGGACTTCACCTGCAAAAAGCCATGCTTATGAACCAAAACACATCATTAGGTGATTTGCTTGAAAAAGATATGGTTAATGGCTATAGTCCAAGTCCCGATTCAACATCATCGTCGTCGCCAGCATCTTCATCTGCTTCAATGAATGTGGAGAGTTTTCTCAATGCTTTATGGAGTTTGTCACCAAAAGTCATGGTTGTTACCGAACAGGACTCGAATCATAATGGTTCGACTCTGATGGAGAGGCTGCTTGAAGCTCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAATCAACTGTGTCAAGAACATCACTAGAGAGATTAAAGGTTGAGAAGATGCTGTTTGGTGAGGAAATCAAGAACATAATTGCTTGTGAAGGAGCTGAAAGAAAGGAAAGACATGAAAAACTTGATAAATGGTTTATGAGACTTGATTCGTGTGGATTCGGTAATGTGCCTTTAAGCTACTATGGTATGTTGCAGGCAAGAAGGTTTCTACAAAGTTATGGTTGTGAGGGATATAGAATGAGAGAAGAAAATGGTTGTGTAGTAACTTGCTGGCAGGATAGGTCTTTGTTTTCAACAACAGCTTGGAGAGCTAGGAAGTAA 1446 0.3873 MESMLQEEGSSSVTCSPLQLFSMMSVSPNIGGIGSPYPWLSRELKSEERGLYLIHLLITCANHVASGSLENANTTLEQISQLATPDGDTMQRIAAYFTEALADRILKTWPGLHRALNSTRIIMLSEEIMVQKFFFELFPFLKVAYILTNQAIVESMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEVLEQMGHKLSEEAEKLDIPFQFNPVLSKLENLDFDKLRVKTGEALAISSILQLHSLLALDDESSSRRKTPILSRNSNGLHLQKAMLMNQNTSLGDLLEKDMVNGYSPSPDSTSSSSPASSSASMNVESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWFMRLDSCGFGNVPLSYYGMLQARRFLQSYGCEGYRMREENGCVVTCWQDRSLFSTTAWRARK* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0227 481 PANTHER SCARECROW-LIKE PROTEIN 3 5 480 IPR030008 GO:0003700|GO:0005634|GO:0009739
Mtr5g0227 481 MobiDBLite consensus disorder prediction 307 322 - -
Mtr5g0227 481 MobiDBLite consensus disorder prediction 301 322 - -
Mtr5g0227 481 Pfam GRAS domain family 53 478 IPR005202 -
Mtr5g0227 481 ProSiteProfiles GRAS family profile. 44 478 IPR005202 -
Mtr5g0227 481 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 480 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0227 Mtr-Chr5 2099005 2101464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0227 1 481 GRAS Transcription Factor Family AT1G50420 66.119 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr5g0227 GRAS 7.8e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0227 - - gmx:100814131 744.962