Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0216 ATGCAAGGAAGCGCCGCCGACGGAGAAGCTTTGGATTTCGAGCCAGAGGAAGATGACTTGATGGACGAAGAAGGTGCTGTTGACGCCGAAGCTTCTCCTCCACATCCCAAACTCAAATCCGCCATCACCTCCGTTCCCAAAAAAACCAAAGGTCGCGGTTTCCGTCAGGATTCTGATTCCTCCAACCGTAACTCTCGTCTTGCTGATTCCGGTTTCGATACTCTCACTGCTGAGGGTGGTCCTGGTCCTCAACGATCTATTGAAGGATGGATTATTTTGGTGACTGGTGTACATGAGGAAGCTCAAGATGATGATTTGCAGAATGCTTTTGGTGAATATGGTGATATTAAGAATCTTCACTTGAATCTTGATCGCCGTACTGGTTTTGTTAAGGGTTATGCACTGATTGAATATGAGCGCTCCGAGGAAGCTCGGAATGCAATAGAGAATTTGAATGGATCTGTGCTTCTCACACAAACCATTTATGTTGATTGGGCTTTCAGCAGTGGACCTATTAACGAGACAGTTAGAAGAAACAGACCTCAGCGGCGCTCCAGGAGTCCTCCTAGGAGGAGATATTGA 582 0.4691 MQGSAADGEALDFEPEEDDLMDEEGAVDAEASPPHPKLKSAITSVPKKTKGRGFRQDSDSSNRNSRLADSGFDTLTAEGGPGPQRSIEGWIILVTGVHEEAQDDDLQNAFGEYGDIKNLHLNLDRRTGFVKGYALIEYERSEEARNAIENLNGSVLLTQTIYVDWAFSSGPINETVRRNRPQRRSRSPPRRRY* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0216 193 CDD RRM_RBM8 84 171 IPR033744 GO:0003729
Mtr5g0216 193 MobiDBLite consensus disorder prediction 1 83 - -
Mtr5g0216 193 MobiDBLite consensus disorder prediction 10 26 - -
Mtr5g0216 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 161 IPR000504 GO:0003723
Mtr5g0216 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Mtr5g0216 193 SMART rrm1_1 91 164 IPR000504 GO:0003723
Mtr5g0216 193 SUPERFAMILY RNA-binding domain, RBD 83 192 IPR035979 GO:0003676
Mtr5g0216 193 Gene3D - 9 183 IPR012677 -
Mtr5g0216 193 PRINTS RNA binding motif protein 8 family signature 43 55 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mtr5g0216 193 PRINTS RNA binding motif protein 8 family signature 81 95 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mtr5g0216 193 PRINTS RNA binding motif protein 8 family signature 137 153 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mtr5g0216 193 PRINTS RNA binding motif protein 8 family signature 155 167 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Mtr5g0216 193 PANTHER RNA-BINDING PROTEIN 8A 6 191 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0216 92 163 Eukaryotic Initiation Factors Gene Family AT4G34110 31.944 5.35e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0216 K12876 - gmx:100778595 305.064