Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0215 ATGGGGTGCATTTGCTCAAAATACTCATCAAAGAAAGAAAAAGTTGAAGAATTTGAAAAGGAAAGTGAGTGGAATAAATCTTCAGTGCAACTAGTTGCTCCTACACAGTTAAATGGGGTTACCATTGGCATTGCCTTGGATGGTTGTAATTCAACACCTCGTTTTGCTAAGGCGTCGTCACAAGTGTTTAGAAGAGCAGAAGAGAAAATCATTCAATTAGATGCTGCTAACAAGAGCCAGCATCAAAGATGTATGACATTAACTTCTGGTGTAGATGAAAGAAAGCCAGTAATGAGTAGAATACTCAGTGTGCAACATTTTTCAGGAGAACAATATGTTGATTCTGGATGGCCATTATGGTTGTCTTCAGTTGCAGGAGAAGCTATCAAAGGTTGGGTTCCTAGAAGGGCCGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCATATAGCAGTGTGCATAAAGCCCGTGATCTTGAAACTGGTAAATATGTGGCTTTGAAGAAAGTTAGGTTTTCAAGTGGAGATGTTGAAAGTGTACGTTTCATGGCAAGGGAAATCTATATTTTGCGTCAACTTGACCATCCTAACATCCTCAAACTCGAAGGTCTTGTCACATCTAGAACTTCAACTAGTTTGTACCTTGTTTTTGAATACATGGATCATGACCTTGCTGGACTAGCTGCTAGACCTGGTGTCAAGTTCACTGAACCACAGATAAAATGTTACATGAAGCAACTGATATGTGGGCTAGAACATTGCCATAGTAGGGGTGTGTTGCACCGTGACATAAAGGGTTCAAATCTTCTAGTTGACAATAATGGAACTCTTAAGATTGGAGATTTTGGTCTTGCAACTGTATATGAACCTGATAGCAAGGTGCCATTGACAAGCCGCGTTGTGACTCTTTGGTATAGGGCACCTGAACTTTTGCTAGGTTCTACCGACTATGGTGCTGCCATTGACTTGTGGAGTGCTGGTTGCATTCTAGCTGAATTGTTGGTGGGTAAGCCTATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTTAAGCTTTGTGGTTCACCATCTGAAGACTATTGGCAAAGAACAAAACTTCCATATGCAACAAGTTTTAAACCACAAAACTCTTACAGACGACAAGTTGCTGATGCATTTAAACACTTTCCTTCTACTGCATTAGCACTTGTTGATAAGCTTCTTTCAATGGAACCACAAAAACGAGGATCTGCAACTTCTGCTCTTGAGAGTGAGTTCTTCACTACAGATCCTCTACCTTGTGATCCTTTAAGTCTACCAAAGTTTCCACCTAGCAAAGAGTTCGATGTCAAACGTCGAGATAAAGAAGCAACAAGAAAAAATACAGAAGCTGTTAAAGGACATGGGCCAGTAACTGCTTCAAGGGGAGCAAGAAATACCAAAGCATTGGAAACACCAGAGTATAATGCTCAAGGAGATATATCGTTGCCGGGAAAGTCGAATACGAGAATGTCCCCTCTTAAATATGAATCACAGGAAGATGACGAGTCTAACAACAAGTGTGAACCAAGTAGATCTCCTATGCATAATGGCTATACACATTCTGCAATATCGTTGCATAGTAAGAGATCAGATTCATCTAGGAAGAATATTCCAGAGTTAAGGGCACAAAGGTCTCATTTGAATCAAGCAGCAATAGATTTCTCCGATTCTATTAAAAAGGAACAGGGCATGTCAGGCCGAGACACCGGAATGGGCTACATACCGAAGAAAAATAGAATCCATTGTTCTGGACCATTAATGCCAGCAGGCGGCAACATTGATGACATGCTTAGAGAGCATGAACGGTTAATGCAGGATGTTTTTCGTAGTGTCAAAAAGGCTAATCCTTAA 1884 0.4071 MGCICSKYSSKKEKVEEFEKESEWNKSSVQLVAPTQLNGVTIGIALDGCNSTPRFAKASSQVFRRAEEKIIQLDAANKSQHQRCMTLTSGVDERKPVMSRILSVQHFSGEQYVDSGWPLWLSSVAGEAIKGWVPRRADSFEKLDQIGQGAYSSVHKARDLETGKYVALKKVRFSSGDVESVRFMAREIYILRQLDHPNILKLEGLVTSRTSTSLYLVFEYMDHDLAGLAARPGVKFTEPQIKCYMKQLICGLEHCHSRGVLHRDIKGSNLLVDNNGTLKIGDFGLATVYEPDSKVPLTSRVVTLWYRAPELLLGSTDYGAAIDLWSAGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKLPYATSFKPQNSYRRQVADAFKHFPSTALALVDKLLSMEPQKRGSATSALESEFFTTDPLPCDPLSLPKFPPSKEFDVKRRDKEATRKNTEAVKGHGPVTASRGARNTKALETPEYNAQGDISLPGKSNTRMSPLKYESQEDDESNNKCEPSRSPMHNGYTHSAISLHSKRSDSSRKNIPELRAQRSHLNQAAIDFSDSIKKEQGMSGRDTGMGYIPKKNRIHCSGPLMPAGGNIDDMLREHERLMQDVFRSVKKANP* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0215 627 Pfam Protein kinase domain 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0215 627 PANTHER CELL DIVISION PROTEIN KINASE 70 622 - -
Mtr5g0215 627 ProSitePatterns Protein kinases ATP-binding region signature. 146 169 IPR017441 GO:0005524
Mtr5g0215 627 CDD STKc_CDK9_like 140 424 - -
Mtr5g0215 627 Gene3D Phosphorylase Kinase; domain 1 127 222 - -
Mtr5g0215 627 SUPERFAMILY Protein kinase-like (PK-like) 133 431 IPR011009 -
Mtr5g0215 627 MobiDBLite consensus disorder prediction 435 530 - -
Mtr5g0215 627 Gene3D Transferase(Phosphotransferase) domain 1 223 464 - -
Mtr5g0215 627 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 70 622 - -
Mtr5g0215 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Mtr5g0215 627 ProSiteProfiles Protein kinase domain profile. 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0215 627 MobiDBLite consensus disorder prediction 505 519 - -
Mtr5g0215 627 SMART serkin_6 140 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0215 627 MobiDBLite consensus disorder prediction 442 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0215 Mtr-Chr5 1978257 1982386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0215 132 472 Core Cell Cycle Gene Families AT5G10270 51.801 1.76e-123 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mtr5g0215 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0215 K08819 - gmx:100791743 873.618