Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0209 ATGAATTGGTCTACTTCAACAACAAGCACAAGTGATGACAGCAACAAGAAGTTTAAGGGAGTTAGGCGTAGAAAGTGGGGAAAATGGGTATCAGAGATTCGTGTTCCGGGAACTCAAGAACGTTTATGGTTGGGAACTTATGCTACACCGGAAGCTGCTGCAGTGGCACACGACGTTGCTTTTTATTGTTTAAAAAGACCTTCTACTTTGGACAAACTCAACTTTCCTGATATTTTGTCTTCTTATTGTATTCAACAAAGAGATAATTTGATGTCTCCTAGGTCTGTTCAAAAGGTTGCTTCAGATGTTGCTATGGATGTTGATGCACGAAACATTGCAAGTCAAGCAACAACTTTGCCAGAAATGAATCATATGGATAATGTTGTTCCTGATGATGTTTTTTGGTGGGATGGTTTGGGTGATGATCAAGGAGTTTCTTGCAGTCAACAACAAGAGGATTTGAACATTTCCATTGAAGACTATCTATAA 489 0.3906 MNWSTSTTSTSDDSNKKFKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAFYCLKRPSTLDKLNFPDILSSYCIQQRDNLMSPRSVQKVASDVAMDVDARNIASQATTLPEMNHMDNVVPDDVFWWDGLGDDQGVSCSQQQEDLNISIEDYL* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0209 162 SMART rav1_2 17 82 IPR001471 GO:0003700|GO:0006355
Mtr5g0209 162 CDD AP2 16 77 IPR001471 GO:0003700|GO:0006355
Mtr5g0209 162 ProSiteProfiles AP2/ERF domain profile. 17 76 IPR001471 GO:0003700|GO:0006355
Mtr5g0209 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 158 - -
Mtr5g0209 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 5 158 - -
Mtr5g0209 162 Pfam AP2 domain 17 64 IPR001471 GO:0003700|GO:0006355
Mtr5g0209 162 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Mtr5g0209 162 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Mtr5g0209 162 SUPERFAMILY DNA-binding domain 17 77 IPR016177 GO:0003677
Mtr5g0209 162 Gene3D AP2/ERF domain 16 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0209 Mtr-Chr5 1939661 1940767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0209 10 162 AP2-EREBP Transcription Factor Family AT1G22810 44.444 2.87e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0209 AP2 9.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0209 - - mtr:MTR_5g008790 328.946