Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0200 ATGTCTTCAAGTGGTGCTGCTAGTTCTGCATACAGAGGAGTCCGTAAGAGAAAATGGGGTAAATGGGTTTCCGAAATTCGCGAGCCCGGCACCAAAACAAGAATCTGGTTAGGAAGTTTCGAGACACCAGAGATGGCAGCGGCTGCATACGACGTAGCTGCCTTGCATTTCAGGGGACGTGAAGCCAGGCTCAATTTCCCGGAACTTGCAAACACTCTTCCTCGTCCTCTAAGCAACAATGCTGACCACATTCGAATGGCAGCACATGAAGCCGCCTTGAGGTTGAGAGCCAACACCAACATGTTGGCGCCACTAGATAACAACAGTGGAACAGGCTGCTCAGCCAGTTCCACTGATGCGGTGGCGCCTCTGAGGGTCAGACTCTCTCCAAGTCAAATTCAAGCGATTAACGATTCGCCTATGGATTCTCCTCCTACATGGATGCAAATGTCACACCCCTTTATGATGGATGATCAAAACATGTTATATGGTAATGGCTATGAATTTGAAGAAAATGAATGGGAAGACATACAACAACACAGTGATTCTCTATGGGATCCTTAA 564 0.477 MSSSGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELANTLPRPLSNNADHIRMAAHEAALRLRANTNMLAPLDNNSGTGCSASSTDAVAPLRVRLSPSQIQAINDSPMDSPPTWMQMSHPFMMDDQNMLYGNGYEFEENEWEDIQQHSDSLWDP* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0200 187 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Mtr5g0200 187 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Mtr5g0200 187 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Mtr5g0200 187 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Mtr5g0200 187 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Mtr5g0200 187 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Mtr5g0200 187 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Mtr5g0200 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 186 - -
Mtr5g0200 187 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Mtr5g0200 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 3 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0200 Mtr-Chr5 1850384 1851829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0200 9 187 AP2-EREBP Transcription Factor Family AT1G71450 60.000 2.78e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0200 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0200 - - aprc:113869810 290.812