Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0199 ATGGAAGAATCAAACAACATGCAAGAGCAAGAACATGCAAATGTTACTCCTCCAACATCCTATATAGGAGTTAGGAAAAGAAAATGGGGGAAATTTGTATCAGAAATTAGAGAGCCAGGTAAGAAGAGCAGAATATGGTTAGGGAGCTATGAAGAACCACAAATGGCAGCAGCAGCGTATGATATAGCAGCTTTTCATCTCAAAGGACACGCCGCGAAGCTTAACTTTCCTGATATGATTGAGAAACTTCCAATGCCAGCAAGCTCCAAAGCGGAGGATATTCGTGTGGCAGCTCAACAAGGTGCATTACAGTTCAAGAGGAGACCATCATCATCATCATCTGAAGGGGGTGTTAATAGCATTAACATTAGTGATAGTAATAGCAATAATGACAGTGTTGTTCCTGCTAGGGTTGGTCTTTCACCTTCTCAAATTCAAGCAATCAATGAGGCTCCTTTGGATTCACCTAAAATGTGGATGCAAATGTTTGGATTTCAATTTGATGAATATAGGAATTATGATAATAATGTTTTAGAGTTGAGTGAATGGGAAGAAATTCAGTATGAGTCATTGTGGGACTAG 582 0.3952 MEESNNMQEQEHANVTPPTSYIGVRKRKWGKFVSEIREPGKKSRIWLGSYEEPQMAAAAYDIAAFHLKGHAAKLNFPDMIEKLPMPASSKAEDIRVAAQQGALQFKRRPSSSSSEGGVNSINISDSNSNNDSVVPARVGLSPSQIQAINEAPLDSPKMWMQMFGFQFDEYRNYDNNVLELSEWEEIQYESLWD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0199 193 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Mtr5g0199 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 192 - -
Mtr5g0199 193 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Mtr5g0199 193 MobiDBLite consensus disorder prediction 104 130 - -
Mtr5g0199 193 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Mtr5g0199 193 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Mtr5g0199 193 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Mtr5g0199 193 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Mtr5g0199 193 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Mtr5g0199 193 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Mtr5g0199 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 2 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0199 Mtr-Chr5 1828264 1829100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0199 1 193 AP2-EREBP Transcription Factor Family AT1G71450 43.655 4.60e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr5g0199 AP2 6.4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0199 - - cam:101493379 264.618