Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0198 ATGGAAGAATCAAACATAATGCAAGAGCATGAACATGTGAATGTTCCTCCTCCAACACCAGCATCATCCAATATGGGAGTTAGGAAGAGAAAATGGGGGAAATTTGCATCAAAAATAAGGGATCAAGGGAGGAACATCAGAATATGGTTAGGTACCTATGAAGAACCACAAATGGCAGCAACTGCATGTGATATAGCAGCTTTTCACCTCAAAGGACGTGACGCAAGACTCAATTTTCCTGATATGATTGAGAAGCTTCAAATGGTCATGTTGAGGTTTTATATTCTTGTAAGCTCCAAAGTAGAGGATATTCGTGTGGCAGCTCAACAAGCAGCATTGCAGTTTAAGAGGAGATCATCATCATCATCTGAAGGGAGTATCAATAGCAGTAATGGCGGTGTTGTTTTAAAAGACAATGATGGGGCTTAA 429 0.4033 MEESNIMQEHEHVNVPPPTPASSNMGVRKRKWGKFASKIRDQGRNIRIWLGTYEEPQMAATACDIAAFHLKGRDARLNFPDMIEKLQMVMLRFYILVSSKVEDIRVAAQQAALQFKRRSSSSSEGSINSSNGGVVLKDNDGA* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0198 142 Pfam AP2 domain 25 72 IPR001471 GO:0003700|GO:0006355
Mtr5g0198 142 Gene3D AP2/ERF domain 25 81 IPR036955 GO:0003700|GO:0006355
Mtr5g0198 142 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Mtr5g0198 142 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Mtr5g0198 142 MobiDBLite consensus disorder prediction 118 135 - -
Mtr5g0198 142 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Mtr5g0198 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 128 - -
Mtr5g0198 142 MobiDBLite consensus disorder prediction 1 27 - -
Mtr5g0198 142 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 2 128 - -
Mtr5g0198 142 CDD AP2 26 81 IPR001471 GO:0003700|GO:0006355
Mtr5g0198 142 SUPERFAMILY DNA-binding domain 25 81 IPR016177 GO:0003677
Mtr5g0198 142 MobiDBLite consensus disorder prediction 118 142 - -
Mtr5g0198 142 SMART rav1_2 26 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0198 Mtr-Chr5 1825401 1826362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0198 22 113 AP2-EREBP Transcription Factor Family AT1G71450 50.000 1.73e-26 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g0198 AP2 1.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0198 - - mtr:MTR_5g008470 149.828