Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0190 ATGAATATGATATTTCTTGGTGCAAATAACTTCACCACATTGATGTTGCAATCCAAAAAGCTTATGCACCATGTGTTCCCCAAATTTTGTATATTACAGAATCTCTATTACGCTTCAATTGCACAACCAGAAACCATAGCCAGAAACGTAAACACACAAATACACACTCTTTCATTACAAGGAAACCTTGAAAAAGCACTTTCACTTGTTTACACCAACCCTTCTTTAACCCTTCAAGACTATGCATTTCTCTTCCATGCTTGTGCTCAGAAAAAATACATCAAACAAGGCATGGCATTGCATCATTACATACTTAACAAACACCCCAAAATTCAAAATGATATTTTTCTTACTAATAACCTCTTAAACATGTACTGTAAATGTGGCCATTTAGATTATGCACGCTACCTGTTTGATCAAATGCCGAGAAGAAACTTTGTTTCTTGGACTGTTCTTGTTTCTGGGTATGCGCAGTTTGGTTTAATTAGAGAGTGTTTCGCTTTATTCTCTGGTATGTTGGCGTGTTTTCGACCCAATGAATTTGCTTTTGCAAGTGTGCTCTGTGCTTGTGAAGAGCAAGATGTTAAATATGGCTTGCAGGTACATGCTGCTGCTTTGAAAATGTCGTTGGATTTCAGTGTATATGTTGCAAATGCTCTTATTACGATGTATAGCAAGTGTTCTGGTGGTTTCGGTGGAAGTTGTGATCAAACCACGGATGATGCGTGGATGGTGTTCAAGTCGATGGAGTACAGAAATCTTATATCTTGGAATTCGATGATTTCAGGTTTTCAATTCCGTGGACTTGGCGACAAAGCTATTGGTCTGTTTGCGCATATGTATTGCAATGGAATTAGGTTTAACAGTACCACGTTACTCGGTGTTTTATCTTCTTTGAATCATTGCATGAGTACTTCGGATGACATCAACAACACACATCATCTGAAGAACTGTTTTCAATTACACTGTCTCACAGTTAAAAGTGGTCTTATTTCAGAAGTTGAAGTGGTAACTGCATTGGTAAAATCCTATGCAGACCTAGGGGGTCACATTTCTGACTGTTTTAAGCTCTTCCTTGATACAAGCGGTGAACATGATATTGTGTCATGGACTGCTATTATTTCTGTGTTTGCAGAGCGCGATCCTGAGCAAGCTTTCCTTCTTTTCTGTCAACTTCATCGAGAAAATTTTGTGTTGGACCGGCACACATTCTCAATTGCCTTAAAAGCTTGCGCGTACTTTGTCACTGAGAAAAATGCAACCGAAGTTCACTCACAAGTAATGAAACAAGGGTTTCACAACGACACAGTTGTTTCAAATGCCTTGATACATGCTTATGGGAGGTCTGGCTCCTTAGCTTTGTCTGAACAAGTTTTTACCGAAATGGGTTGCCACGATTTGGTTTCTTGGAATTCAATGCTCAAGTCTTATGCCATTCACGGTCGAGCTAAAGATGCACTGGATCTCTTTAAGCAAATGGATGTTCATCCAGATTCTGCAACCTTTGTTGCGCTTCTCGCGGCATGCAGCCACGCTGGACTTGTTGAAGAAGGAACACAAATTTTCAACTCTATGACTGAAAGTCATGGTATTGCTCCTCATTTAGATCACTATTCCTGCATGGTTGACCTTTACGGACGAGCTGGAAAGATATTTGAGGCAGAGGAGTTGATACGCAAAATGCCAATGAAACCTGATTCTGTAATTTGGAGTTCATTACTCGGATCTTGCAGGAAGCATGGTGAGGCTGACTTGGCCAAATTGGCAGCCGATAAATTCAAAGTGTTAGATCCTAAAAACTCGTTGGCGTACATACAAATGTCAAACATATATTCCTCTGGAGGTAGTTTTATTGAAGCTGGATTGATTCGGAAGGAAATGAGAGACTCTAAAGTGAGAAAAAGACCTGGTTTAAGCTGGGTTGAGGTCGGGAAGCAGGTTCATGAATTCACATCTGGTGGCCAACATCATCCGAAAAGGCAGGCTATATTGAGCCGGCTCGAGACATTGATTGGACAATTGAAAGAAATGGGCTATGCTCCAGAGATTGGCTCAGCTTTGCATGACATTGAAGTGGAGCACATAGAAGACCAATTGTTTCATCATAGTGAGAAGATGGCATTGGTATTTGCTATAATGAATGAAGGAATTTCGCCTTGTGCTGGAAATGTCATTAAAATTATGAAGAATATTCGTATTTGTGTGGATTGTCATAACTTTATGAAATTAGCGTCAAAACTGTTTCAGAAGGAGATTGTCGTAAGAGATTCAAATCGCTTTCACCATTTCAAATATGCAACATGCTCTTGTAATGACTATTGGTAA 2325 0.397 MNMIFLGANNFTTLMLQSKKLMHHVFPKFCILQNLYYASIAQPETIARNVNTQIHTLSLQGNLEKALSLVYTNPSLTLQDYAFLFHACAQKKYIKQGMALHHYILNKHPKIQNDIFLTNNLLNMYCKCGHLDYARYLFDQMPRRNFVSWTVLVSGYAQFGLIRECFALFSGMLACFRPNEFAFASVLCACEEQDVKYGLQVHAAALKMSLDFSVYVANALITMYSKCSGGFGGSCDQTTDDAWMVFKSMEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIRFNSTTLLGVLSSLNHCMSTSDDINNTHHLKNCFQLHCLTVKSGLISEVEVVTALVKSYADLGGHISDCFKLFLDTSGEHDIVSWTAIISVFAERDPEQAFLLFCQLHRENFVLDRHTFSIALKACAYFVTEKNATEVHSQVMKQGFHNDTVVSNALIHAYGRSGSLALSEQVFTEMGCHDLVSWNSMLKSYAIHGRAKDALDLFKQMDVHPDSATFVALLAACSHAGLVEEGTQIFNSMTESHGIAPHLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEADLAKLAADKFKVLDPKNSLAYIQMSNIYSSGGSFIEAGLIRKEMRDSKVRKRPGLSWVEVGKQVHEFTSGGQHHPKRQAILSRLETLIGQLKEMGYAPEIGSALHDIEVEHIEDQLFHHSEKMALVFAIMNEGISPCAGNVIKIMKNIRICVDCHNFMKLASKLFQKEIVVRDSNRFHHFKYATCSCNDYW* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0190 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 533 IPR002885 -
Mtr5g0190 774 Gene3D Tetratricopeptide repeat domain 496 662 IPR011990 GO:0005515
Mtr5g0190 774 Gene3D Tetratricopeptide repeat domain 47 192 IPR011990 GO:0005515
Mtr5g0190 774 Gene3D Tetratricopeptide repeat domain 379 495 IPR011990 GO:0005515
Mtr5g0190 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 496 IPR002885 -
Mtr5g0190 774 Pfam PPR repeat 147 173 IPR002885 -
Mtr5g0190 774 Pfam PPR repeat 439 463 IPR002885 -
Mtr5g0190 774 Pfam PPR repeat 119 146 IPR002885 -
Mtr5g0190 774 Pfam PPR repeat 501 528 IPR002885 -
Mtr5g0190 774 Pfam PPR repeat 537 562 IPR002885 -
Mtr5g0190 774 Pfam PPR repeat 468 493 IPR002885 -
Mtr5g0190 774 Pfam PPR repeat 255 285 IPR002885 -
Mtr5g0190 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Mtr5g0190 774 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 32 688 - -
Mtr5g0190 774 SUPERFAMILY TPR-like 81 636 IPR011990 GO:0005515
Mtr5g0190 774 Pfam E motif 580 642 IPR046848 -
Mtr5g0190 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Mtr5g0190 774 Pfam DYW family of nucleic acid deaminases 678 774 IPR032867 GO:0008270
Mtr5g0190 774 PANTHER - 32 688 - -
Mtr5g0190 774 TIGRFAM PPR: pentatricopeptide repeat domain 501 533 IPR002885 -
Mtr5g0190 774 TIGRFAM PPR: pentatricopeptide repeat domain 468 493 IPR002885 -
Mtr5g0190 774 TIGRFAM PPR: pentatricopeptide repeat domain 119 147 IPR002885 -
Mtr5g0190 774 TIGRFAM PPR: pentatricopeptide repeat domain 538 561 IPR002885 -
Mtr5g0190 774 Gene3D Tetratricopeptide repeat domain 193 320 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0190 Mtr-Chr5 1732955 1735279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0190 81 774 Glycoside Hydrolase AT3G49170 34.936 1.42e-131 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0190 - - mtr:MTR_5g008260 1574.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0190 5 1732955 1735279 Mtr1g3843 1 50030273 50037347 PCT